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bioc
alabaster.vcf:Save and Load Variant Data to/from File
Save variant calling SummarizedExperiment to file and load them back as VCF objects. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Maintained by Aaron Lun. Last updated 5 months ago.
4.65 score 6 scripts 1 dependents
piyalkarum
rCNV:Detect Copy Number Variants from SNPs Data
Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).
Maintained by Piyal Karunarathne. Last updated 26 days ago.
cnv-analysiscopy-number-variationgene-duplicationgeneticsgenomicslandscape-geneticssnpscpp
6 stars 4.26 score 4 scripts
cran
sim1000G:Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
Generates realistic simulated genetic data in families or unrelated individuals.
Maintained by Apostolos Dimitromanolakis. Last updated 6 years ago.
1 stars 2.78 score