R-universe search: exports:psms

Showing 4 of total 4 results (show query)

bioc

mzR:parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a subset of the proteowizard library for mzXML, mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.

Maintained by Steffen Neumann. Last updated 2 months ago.

immunooncology infrastructure dataimport proteomics metabolomics massspectrometry zlib cpp

45 stars 12.77 score 204 scripts 44 dependents

bioc

MSnbase:Base Functions and Classes for Mass Spectrometry and Proteomics

MSnbase provides infrastructure for manipulation, processing and visualisation of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.

Maintained by Laurent Gatto. Last updated 16 days ago.

immunooncology infrastructure proteomics massspectrometry qualitycontrol dataimport bioconductor bioinformatics mass-spectrometry proteomics-data visualisation cpp

131 stars 12.76 score 772 scripts 36 dependents

bioc

ProtGenerics:Generic infrastructure for Bioconductor mass spectrometry packages

S4 generic functions and classes needed by Bioconductor proteomics packages.

Maintained by Laurent Gatto. Last updated 2 months ago.

infrastructure proteomics massspectrometry bioconductor mass-spectrometry metabolomics

8 stars 9.36 score 4 scripts 188 dependents

bioc

MSnID:Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications

Extracts MS/MS ID data from mzIdentML (leveraging mzID package) or text files. After collating the search results from multiple datasets it assesses their identification quality and optimize filtering criteria to achieve the maximum number of identifications while not exceeding a specified false discovery rate. Also contains a number of utilities to explore the MS/MS results and assess missed and irregular enzymatic cleavages, mass measurement accuracy, etc.

Maintained by Vlad Petyuk. Last updated 5 months ago.

proteomics massspectrometry immunooncology

5.06 score 57 scripts