Showing 8 of total 8 results (show query)
bioc
CATALYST:Cytometry dATa anALYSis Tools
CATALYST provides tools for preprocessing of and differential discovery in cytometry data such as FACS, CyTOF, and IMC. Preprocessing includes i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation. For differential discovery, the package provides a number of convenient functions for data processing (e.g., clustering, dimension reduction), as well as a suite of visualizations for exploratory data analysis and exploration of results from differential abundance (DA) and state (DS) analysis in order to identify differences in composition and expression profiles at the subpopulation-level, respectively.
Maintained by Helena L. Crowell. Last updated 4 months ago.
clusteringdataimportdifferentialexpressionexperimentaldesignflowcytometryimmunooncologymassspectrometrynormalizationpreprocessingsinglecellsoftwarestatisticalmethodvisualization
67 stars 10.99 score 362 scripts 2 dependents
theomichelot
moveHMM:Animal Movement Modelling using Hidden Markov Models
Provides tools for animal movement modelling using hidden Markov models. These include processing of tracking data, fitting hidden Markov models to movement data, visualization of data and fitted model, decoding of the state process, etc. <doi:10.1111/2041-210X.12578>.
Maintained by Theo Michelot. Last updated 1 years ago.
38 stars 8.63 score 112 scripts
igdawg
BIGDAWG:Case-Cotrol Analysis of Multi-Allelic Loci
Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.
Maintained by Steve Mack. Last updated 2 years ago.
3 stars 6.10 score 4 scripts 2 dependentsbioc
spatialFDA:A Tool for Spatial Multi-sample Comparisons
spatialFDA is a package to calculate spatial statistics metrics. The package takes a SpatialExperiment object and calculates spatial statistics metrics using the package spatstat. Then it compares the resulting functions across samples/conditions using functional additive models as implemented in the package refund. Furthermore, it provides exploratory visualisations using functional principal component analysis, as well implemented in refund.
Maintained by Martin Emons. Last updated 1 months ago.
softwarespatialtranscriptomics
3 stars 5.18 score 6 scripts
jpritikin
pcFactorStan:Stan Models for the Paired Comparison Factor Model
Provides convenience functions and pre-programmed Stan models related to the paired comparison factor model. Its purpose is to make fitting paired comparison data using Stan easy. This package is described in Pritikin (2020) <doi:10.1016/j.heliyon.2020.e04821>.
Maintained by Joshua N. Pritikin. Last updated 2 years ago.
bayesian-inferencefactor-analysispaired-comparisonsstancpp
2 stars 4.00 score
kryberg-usgs
seawaveQ:SEAWAVE-Q Model
A model and utilities for analyzing trends in chemical concentrations in streams with a seasonal wave (seawave) and adjustment for streamflow (Q) and other ancillary variables. See Ryberg and York, 2020, <doi:10.3133/ofr20201082>.
Maintained by Karen R. Ryberg. Last updated 4 years ago.
2.43 score 27 scripts
consmavr
FLR:Fuzzy Logic Rule Classifier
FLR algorithm for classification
Maintained by Constantinos Mavridis. Last updated 13 years ago.
1.78 score 3 scripts