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bioc
metagene2:A package to produce metagene plots
This package produces metagene plots to compare coverages of sequencing experiments at selected groups of genomic regions. It can be used for such analyses as assessing the binding of DNA-interacting proteins at promoter regions or surveying antisense transcription over the length of a gene. The metagene2 package can manage all aspects of the analysis, from normalization of coverages to plot facetting according to experimental metadata. Bootstraping analysis is used to provide confidence intervals of per-sample mean coverages.
Maintained by Eric Fournier. Last updated 5 months ago.
chipseqgeneticsmultiplecomparisoncoveragealignmentsequencing
4 stars 5.45 score 8 scriptsbioc
ribor:An R Interface for Ribo Files
The ribor package provides an R Interface for .ribo files. It provides functionality to read the .ribo file, which is of HDF5 format, and performs common analyses on its contents.
Maintained by Michael Geng. Last updated 5 months ago.
4.51 score 32 scripts
katlande
PCBS:Principal Component BiSulfite
A system for fast, accurate, and flexible whole genome bisulfite sequencing (WGBS) data analysis of two-condition comparisons. Principal Component BiSulfite, 'PCBS', assigns methylated loci eigenvector values from the treatment-delineating principal component in lieu of running millions of pairwise statistical tests, which dramatically increases analysis flexibility and reduces computational requirements. Methods: <https://katlande.github.io/PCBS/articles/Differential_Methylation.html>.
Maintained by Kathryn Lande. Last updated 7 months ago.
1 stars 3.85 score