R-universe search: exports:plot

Showing 6 of total 6 results (show query)

boxuancui

DataExplorer:Automate Data Exploration and Treatment

Automated data exploration process for analytic tasks and predictive modeling, so that users could focus on understanding data and extracting insights. The package scans and analyzes each variable, and visualizes them with typical graphical techniques. Common data processing methods are also available to treat and format data.

Maintained by Boxuan Cui. Last updated 1 years ago.

data-analysis data-exploration data-science eda visualization

523 stars 11.21 score 2.2k scripts

ss3sim

ss3sim:Fisheries Stock Assessment Simulation Testing with Stock Synthesis

A framework for fisheries stock assessment simulation testing with Stock Synthesis (SS3) as described in Anderson et al. (2014) <doi:10.1371/journal.pone.0092725>.

Maintained by Kelli F. Johnson. Last updated 5 months ago.

fisheries simulation stock-synthesis

39 stars 8.72 score 149 scripts

cefet-rj-dal

daltoolbox:Leveraging Experiment Lines to Data Analytics

The natural increase in the complexity of current research experiments and data demands better tools to enhance productivity in Data Analytics. The package is a framework designed to address the modern challenges in data analytics workflows. The package is inspired by Experiment Line concepts. It aims to provide seamless support for users in developing their data mining workflows by offering a uniform data model and method API. It enables the integration of various data mining activities, including data preprocessing, classification, regression, clustering, and time series prediction. It also offers options for hyper-parameter tuning and supports integration with existing libraries and languages. Overall, the package provides researchers with a comprehensive set of functionalities for data science, promoting ease of use, extensibility, and integration with various tools and libraries. Information on Experiment Line is based on Ogasawara et al. (2009) <doi:10.1007/978-3-642-02279-1_20>.

Maintained by Eduardo Ogasawara. Last updated 2 months ago.

1 stars 6.65 score 536 scripts 4 dependents

bioc

DegNorm:DegNorm: degradation normalization for RNA-seq data

This package performs degradation normalization in bulk RNA-seq data to improve differential expression analysis accuracy.

Maintained by Ji-Ping Wang. Last updated 5 months ago.

rnaseq normalization geneexpression alignment coverage differentialexpression batcheffect software sequencing immunooncology qualitycontrol dataimport openblas cpp openmp

1 stars 5.08 score 3 scripts

connor-reid-tiffany

omu:A Metabolomics Analysis Tool for Intuitive Figures and Convenient Metadata Collection

Facilitates the creation of intuitive figures to describe metabolomics data by utilizing Kyoto Encyclopedia of Genes and Genomes (KEGG) hierarchy data, and gathers functional orthology and gene data from the KEGG-REST API.

Maintained by Connor Tiffany. Last updated 1 years ago.

3 stars 4.89 score 52 scripts

bioc

ScreenR:Package to Perform High Throughput Biological Screening

ScreenR is a package suitable to perform hit identification in loss of function High Throughput Biological Screenings performed using barcoded shRNA-based libraries. ScreenR combines the computing power of software such as edgeR with the simplicity of use of the Tidyverse metapackage. ScreenR executes a pipeline able to find candidate hits from barcode counts, and integrates a wide range of visualization modes for each step of the analysis.

Maintained by Emanuel Michele Soda. Last updated 5 months ago.

software assaydomain geneexpression high-throughput-screening

1 stars 3.11 score 13 scripts