Showing 3 of total 3 results (show query)
klausvigo
phangorn:Phylogenetic Reconstruction and Analysis
Allows for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation (Schliep 2011). Offers methods for tree comparison, model selection and visualization of phylogenetic networks as described in Schliep et al. (2017).
Maintained by Klaus Schliep. Last updated 5 days ago.
softwaretechnologyqualitycontrolphylogenetic-analysisphylogeneticsopenblascpp
206 stars 16.70 score 2.5k scripts 135 dependents
pasraia
RRphylo:Phylogenetic Ridge Regression Methods for Comparative Studies
Functions for phylogenetic analysis (Castiglione et al., 2018 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.
Maintained by Silvia Castiglione. Last updated 11 days ago.
10 stars 7.78 score 83 scripts
lbbe-software
MareyMap:Estimation of Meiotic Recombination Rates Using Marey Maps
Local recombination rates are graphically estimated across a genome using Marey maps.
Maintained by Aurélie Siberchicot. Last updated 30 days ago.
1 stars 5.30 score 20 scripts