Showing 5 of total 5 results (show query)
docma-tu
tosca:Tools for Statistical Content Analysis
A framework for statistical analysis in content analysis. In addition to a pipeline for preprocessing text corpora and linking to the latent Dirichlet allocation from the 'lda' package, plots are offered for the descriptive analysis of text corpora and topic models. In addition, an implementation of Chang's intruder words and intruder topics is provided. Sample data for the vignette is included in the toscaData package, which is available on gitHub: <https://github.com/Docma-TU/toscaData>.
Maintained by Lars Koppers. Last updated 3 years ago.
16 stars 6.64 score 61 scripts 1 dependents
bioc
ChIPseqR:Identifying Protein Binding Sites in High-Throughput Sequencing Data
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Maintained by Peter Humburg. Last updated 5 months ago.
4.70 score 1 scripts
shixiangwang
copynumber:Segmentation of single- and multi-track copy number data by penalized least squares regression (with hg38 and mm10).
Penalized least squares regression is applied to fit piecewise constant curves to copy number data to locate genomic regions of constant copy number. Procedures are available for individual segmentation of each sample, joint segmentation of several samples and joint segmentation of the two data tracks from SNP-arrays. Several plotting functions are available for visualization of the data and the segmentation results.
Maintained by Gro Nilsen. Last updated 2 years ago.
acghsnpcopynumbervariationgeneticsvisualization
19 stars 3.88 score 80 scriptsbioc
ssviz:A small RNA-seq visualizer and analysis toolkit
Small RNA sequencing viewer
Maintained by Diana Low. Last updated 5 months ago.
immunooncologysequencingrnaseqvisualizationmultiplecomparisongenetics
3.60 score 2 scripts