CLONETv2:Clonality Estimates in Tumor
Analyze data from next-generation sequencing experiments on genomic samples. 'CLONETv2' offers a set of functions to
compute allele specific copy number and clonality from
segmented data and SNPs position pileup. The package has also
calculated the clonality of single nucleotide variants given
read counts at mutated positions. The package has been
developed at the laboratory of Computational and Functional
Oncology, Department of CIBIO, University of Trento (Italy),
under the supervision of prof Francesca Demichelis. References:
Prandi et al. (2014) <doi:10.1186/s13059-014-0439-6>; Carreira
et al. (2014) <doi:10.1126/scitranslmed.3009448>; Romanel et
al. (2015) <doi:10.1126/scitranslmed.aac9511>.
