Showing 8 of total 8 results (show query)
reinhardfurrer
spam:SPArse Matrix
Set of functions for sparse matrix algebra. Differences with other sparse matrix packages are: (1) we only support (essentially) one sparse matrix format, (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within G(M)RF. (4) and it is fast and scalable (with the extension package spam64). Documentation about 'spam' is provided by vignettes included in this package, see also Furrer and Sain (2010) <doi:10.18637/jss.v036.i10>; see 'citation("spam")' for details.
Maintained by Reinhard Furrer. Last updated 2 months ago.
1 stars 9.36 score 420 scripts 439 dependents
robinhankin
permutations:The Symmetric Group: Permutations of a Finite Set
Manipulates invertible functions from a finite set to itself. Can transform from word form to cycle form and back. To cite the package in publications please use Hankin (2020) "Introducing the permutations R package", SoftwareX, volume 11 <doi:10.1016/j.softx.2020.100453>.
Maintained by Robin K. S. Hankin. Last updated 2 months ago.
6 stars 8.23 score 49 scripts 2 dependents
khliland
HDANOVA:High-Dimensional Analysis of Variance
Functions and datasets to support Smilde, Marini, Westerhuis and Liland (2025, ISBN: 978-1-394-21121-0) "Analysis of Variance for High-Dimensional Data - Applications in Life, Food and Chemical Sciences". This implements and imports a collection of methods for HD-ANOVA data analysis with common interfaces, result- and plotting functions, multiple real data sets and four vignettes covering a range different applications.
Maintained by Kristian Hovde Liland. Last updated 17 days ago.
4.35 score 8 scripts 1 dependents
bioc
lmdme:Linear Model decomposition for Designed Multivariate Experiments
linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.
Maintained by Cristobal Fresno. Last updated 5 months ago.
microarrayonechanneltwochannelvisualizationdifferentialexpressionexperimentdatacancer
3.78 score 1 scripts
elilillyco
TSDT:Treatment-Specific Subgroup Detection Tool
Implements a method for identifying subgroups with superior response relative to the overall sample.
Maintained by Brian Denton. Last updated 3 months ago.
2.78 score 60 scripts
sigbertklinke
exams.forge:Support for Compiling Examination Tasks using the 'exams' Package
The main aim is to further facilitate the creation of exercises based on the package 'exams' by Grün, B., and Zeileis, A. (2009) <doi:10.18637/jss.v029.i10>. Creating effective student exercises involves challenges such as creating appropriate data sets and ensuring access to intermediate values for accurate explanation of solutions. The functionality includes the generation of univariate and bivariate data including simple time series, functions for theoretical distributions and their approximation, statistical and mathematical calculations for tasks in basic statistics courses as well as general tasks such as string manipulation, LaTeX/HTML formatting and the editing of XML task files for 'Moodle'.
Maintained by Sigbert Klinke. Last updated 9 months ago.
2.70 score 1 scripts
cran
NEpiC:Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals
Package for a Network assisted algorithm for Epigenetic studies using mean and variance Combined signals: NEpiC. NEpiC combines both signals in mean and variance differences in methylation level between case and control groups searching for differentially methylated sub-networks (modules) using the protein-protein interaction network.
Maintained by Peifeng Ruan. Last updated 9 years ago.
1.00 score