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phiala

ecodist:Dissimilarity-Based Functions for Ecological Analysis

Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community ecological data. The original package description is in Goslee and Urban (2007) <doi:10.18637/jss.v022.i07>, with further statistical detail in Goslee (2010) <doi:10.1007/s11258-009-9641-0>.

Maintained by Sarah Goslee. Last updated 1 years ago.

openblas

9 stars 9.84 score 566 scripts 9 dependents

dvrbts

labdsv:Ordination and Multivariate Analysis for Ecology

A variety of ordination and community analyses useful in analysis of data sets in community ecology. Includes many of the common ordination methods, with graphical routines to facilitate their interpretation, as well as several novel analyses.

Maintained by David W. Roberts. Last updated 2 years ago.

fortran

3 stars 6.05 score 452 scripts 12 dependents

bioc

flowCyBar:Analyze flow cytometric data using gate information

A package to analyze flow cytometric data using gate information to follow population/community dynamics

Maintained by Joachim Schumann. Last updated 5 months ago.

immunooncologycellbasedassaysclusteringflowcytometrysoftwarevisualization

4.15 score 1 scripts

clarkevansteenderen

BinMat:Processes Binary Data Obtained from Fragment Analysis (Such as AFLPs, ISSRs, and RFLPs)

A molecular genetics tool that processes binary data from fragment analysis. It consolidates replicate sample pairs, outputs summary statistics, and produces hierarchical clustering trees and nMDS plots. This package was developed from the publication available here: <https://www.sciencedirect.com/science/article/pii/S1049964420306538>. The GUI version of this package is available on the R Shiny online server at: <https://clarkevansteenderen.shinyapps.io/BINMAT/> or it is accessible via GitHub by typing: shiny::runGitHub("BinMat", "clarkevansteenderen") into the console in R. Two real-world datasets accompany the package: an AFLP dataset of Bunias orientalis samples from Tewes et. al. (2017) <https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/1365-2745.12869>, and an ISSR dataset of Nymphaea specimens from Reid et. al. (2021) <https://www.sciencedirect.com/science/article/pii/S0304377021000218> . The authors of these publications are thanked for allowing the use of their data.

Maintained by Clarke van Steenderen. Last updated 3 years ago.

2.00 score 3 scripts

coissac

ProcMod:Informative Procrustean Matrix Correlation

Estimates corrected Procrustean correlation between matrices for removing overfitting effect. Coissac Eric and Gonindard-Melodelima Christelle (2019) <doi:10.1101/842070>.

Maintained by Eric Coissac. Last updated 4 years ago.

1.00 score

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