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sritchie73
NetRep:Permutation Testing Network Module Preservation Across Datasets
Functions for assessing the replication/preservation of a network module's topology across datasets through permutation testing; Ritchie et al. (2015) <doi: 10.1016/j.cels.2016.06.012>.
Maintained by Scott Ritchie. Last updated 4 years ago.
12 stars 6.84 score 16 scripts 3 dependents
bioc
splineTimeR:Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
This package provides functions for differential gene expression analysis of gene expression time-course data. Natural cubic spline regression models are used. Identified genes may further be used for pathway enrichment analysis and/or the reconstruction of time dependent gene regulatory association networks.
Maintained by Herbert Braselmann. Last updated 5 months ago.
geneexpressiondifferentialexpressiontimecourseregressiongenesetenrichmentnetworkenrichmentnetworkinferencegraphandnetwork
4.01 score 17 scripts