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emmanuelparadis
pegas:Population and Evolutionary Genetics Analysis System
Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
Maintained by Emmanuel Paradis. Last updated 1 years ago.
7.56 score 576 scripts 17 dependents
mhahsler
rMSA:Interface for Popular Multiple Sequence Alignment Tools
Seamlessly interfaces the Multiple Sequence Alignment software packages ClustalW, MAFFT, MUSCLE and Kalign (downloaded separately) and provides support to calcualte distances between sequences. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.
Maintained by Michael Hahsler. Last updated 10 months ago.
geneticssequencinginfrastructurealignmentbioinformaticssequence-alignment
12 stars 3.78 score 7 scripts