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klausvigo

phangorn:Phylogenetic Reconstruction and Analysis

Allows for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation (Schliep 2011). Offers methods for tree comparison, model selection and visualization of phylogenetic networks as described in Schliep et al. (2017).

Maintained by Klaus Schliep. Last updated 15 hours ago.

softwaretechnologyqualitycontrolphylogenetic-analysisphylogeneticsopenblascpp

206 stars 16.70 score 2.5k scripts 135 dependents

hwborchers

pracma:Practical Numerical Math Functions

Provides a large number of functions from numerical analysis and linear algebra, numerical optimization, differential equations, time series, plus some well-known special mathematical functions. Uses 'MATLAB' function names where appropriate to simplify porting.

Maintained by Hans W. Borchers. Last updated 1 years ago.

29 stars 12.34 score 6.6k scripts 931 dependents

ctmm-initiative

ctmm:Continuous-Time Movement Modeling

Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic-process movement models to animal tracking data. The package is described in Calabrese et al (2016) <doi:10.1111/2041-210X.12559>, with models and methods based on those introduced and detailed in Fleming & Calabrese et al (2014) <doi:10.1086/675504>, Fleming et al (2014) <doi:10.1111/2041-210X.12176>, Fleming et al (2015) <doi:10.1103/PhysRevE.91.032107>, Fleming et al (2015) <doi:10.1890/14-2010.1>, Fleming et al (2016) <doi:10.1890/15-1607>, Péron & Fleming et al (2016) <doi:10.1186/s40462-016-0084-7>, Fleming & Calabrese (2017) <doi:10.1111/2041-210X.12673>, Péron et al (2017) <doi:10.1002/ecm.1260>, Fleming et al (2017) <doi:10.1016/j.ecoinf.2017.04.008>, Fleming et al (2018) <doi:10.1002/eap.1704>, Winner & Noonan et al (2018) <doi:10.1111/2041-210X.13027>, Fleming et al (2019) <doi:10.1111/2041-210X.13270>, Noonan & Fleming et al (2019) <doi:10.1186/s40462-019-0177-1>, Fleming et al (2020) <doi:10.1101/2020.06.12.130195>, Noonan et al (2021) <doi:10.1111/2041-210X.13597>, Fleming et al (2022) <doi:10.1111/2041-210X.13815>, Silva et al (2022) <doi:10.1111/2041-210X.13786>, Alston & Fleming et al (2023) <doi:10.1111/2041-210X.14025>.

Maintained by Christen H. Fleming. Last updated 8 days ago.

51 stars 10.54 score 534 scripts 4 dependents

aphalo

photobiology:Photobiological Calculations

Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima: peaks, valleys and spikes. Conversion between energy-and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision. This package is part of the 'r4photobiology' suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

Maintained by Pedro J. Aphalo. Last updated 15 days ago.

lightphotobiologyquantificationr4photobiology-suiteradiationspectrasun-position

4 stars 9.35 score 604 scripts 12 dependents

markheckmann

OpenRepGrid:Tools to Analyze Repertory Grid Data

Analyze repertory grids, a qualitative-quantitative data collection technique devised by George A. Kelly in the 1950s. Today, grids are used across various domains ranging from clinical psychology to marketing. The package contains functions to quantitatively analyze and visualize repertory grid data (e.g. 'Fransella', 'Bell', & 'Bannister', 2004, ISBN: 978-0-470-09080-0). The package is part of the The package is part of the <https://openrepgrid.org/> project.

Maintained by Mark Heckmann. Last updated 27 days ago.

repertory-gridrepgrid

19 stars 6.69 score 156 scripts

wjschne

ggdiagram:Object-Oriented Diagram Plots with ggplot2

The ggdiagram package creates path diagrams with an object-oriented approach and plots diagrams with ggplot2.

Maintained by W. Joel Schneider. Last updated 5 days ago.

diagramsfactor-analysisggplot2path-analysiss7structural-equation-modeling

32 stars 5.43 score

cran

qpcR:Modelling and Analysis of Real-Time PCR Data

Model fitting, optimal model selection and calculation of various features that are essential in the analysis of quantitative real-time polymerase chain reaction (qPCR).

Maintained by Andrej-Nikolai Spiess. Last updated 7 years ago.

2 stars 3.06 score 1 dependents

osubera

elliplot:Ellipse Summary Plot of Quantiles

Correlation chart of two set (x and y) of data. Using Quantiles. Visualize the effect of factor.

Maintained by Shinichiro Tomizono. Last updated 3 years ago.

1.00 score 7 scripts

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