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friendly
vcdExtra:'vcd' Extensions and Additions
Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data and the 'gnm' package for Generalized Nonlinear Models. In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and adds a 3D version in 'mosaic3d'. Additionally, methods are provided for comparing and visualizing lists of 'glm' and 'loglm' objects. This package is now a support package for the book, "Discrete Data Analysis with R" by Michael Friendly and David Meyer.
Maintained by Michael Friendly. Last updated 5 days ago.
categorical-data-visualizationgeneralized-linear-modelsmosaic-plots
24 stars 10.85 score 472 scripts 3 dependents
alenxav
NAM:Nested Association Mapping
Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
Maintained by Alencar Xavier. Last updated 5 years ago.
2 stars 5.72 score 44 scripts 1 dependentsalenxav
bWGR:Bayesian Whole-Genome Regression
Whole-genome regression methods on Bayesian framework fitted via EM or Gibbs sampling, single step (<doi:10.1534/g3.119.400728>), univariate and multivariate (<doi:10.1186/s12711-022-00730-w>, <doi:10.1093/genetics/iyae179>), with optional kernel term and sampling techniques (<doi:10.1186/s12859-017-1582-3>).
Maintained by Alencar Xavier. Last updated 4 months ago.
7 stars 4.24 score 16 scripts
dkahle
latte:Interface to 'LattE' and '4ti2'
Back-end connections to 'LattE' (<https://www.math.ucdavis.edu/~latte>) for counting lattice points and integration inside convex polytopes and '4ti2' (<http://www.4ti2.de/>) for algebraic, geometric, and combinatorial problems on linear spaces and front-end tools facilitating their use in the 'R' ecosystem.
Maintained by David Kahle. Last updated 2 years ago.
3 stars 3.18 score 1 scripts
cran
timsac:Time Series Analysis and Control Package
Functions for statistical analysis, prediction and control of time series based mainly on Akaike and Nakagawa (1988) <ISBN 978-90-277-2786-2>.
Maintained by Masami Saga. Last updated 1 years ago.
1 stars 1.48 score 1 dependents