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bioc
granulator:Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data
granulator is an R package for the cell type deconvolution of heterogeneous tissues based on bulk RNA-seq data or single cell RNA-seq expression profiles. The package provides a unified testing interface to rapidly run and benchmark multiple state-of-the-art deconvolution methods. Data for the deconvolution of peripheral blood mononuclear cells (PBMCs) into individual immune cell types is provided as well.
Maintained by Sabina Pfister. Last updated 2 months ago.
rnaseqgeneexpressiondifferentialexpressiontranscriptomicssinglecellstatisticalmethodregression
3 stars 4.48 score 6 scripts