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bioc
FindIT2:find influential TF and Target based on multi-omics data
This package implements functions to find influential TF and target based on different input type. It have five module: Multi-peak multi-gene annotaion(mmPeakAnno module), Calculate regulation potential(calcRP module), Find influential Target based on ChIP-Seq and RNA-Seq data(Find influential Target module), Find influential TF based on different input(Find influential TF module), Calculate peak-gene or peak-peak correlation(peakGeneCor module). And there are also some other useful function like integrate different source information, calculate jaccard similarity for your TF.
Maintained by Guandong Shang. Last updated 5 months ago.
softwareannotationchipseqatacseqgeneregulationmultiplecomparisongenetarget
6 stars 5.08 score 7 scripts