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bioc
AneuFinder:Analysis of Copy Number Variation in Single-Cell-Sequencing Data
AneuFinder implements functions for copy-number detection, breakpoint detection, and karyotype and heterogeneity analysis in single-cell whole genome sequencing and strand-seq data.
Maintained by Aaron Taudt. Last updated 6 days ago.
immunooncologysoftwaresequencingsinglecellcopynumbervariationgenomicvariationhiddenmarkovmodelwholegenomecpp
18 stars 7.90 score 37 scriptsbioc
breakpointR:Find breakpoints in Strand-seq data
This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
Maintained by David Porubsky. Last updated 5 months ago.
softwaresequencingdnaseqsinglecellcoverage
8 stars 5.64 score 11 scriptsbioc
methimpute:Imputation-guided re-construction of complete methylomes from WGBS data
This package implements functions for calling methylation for all cytosines in the genome.
Maintained by Aaron Taudt. Last updated 5 months ago.
immunooncologysoftwarednamethylationepigeneticshiddenmarkovmodelsequencingcoveragecppopenmp
4.11 score 13 scripts