R-universe search: exports:inner

Showing 23 of total 23 results (show query)

tidyverse

dplyr:A Grammar of Data Manipulation

A fast, consistent tool for working with data frame like objects, both in memory and out of memory.

Maintained by Hadley Wickham. Last updated 25 days ago.

data-manipulation grammar cpp

4.8k stars 24.68 score 659k scripts 7.8k dependents

sparklyr

sparklyr:R Interface to Apache Spark

R interface to Apache Spark, a fast and general engine for big data processing, see <https://spark.apache.org/>. This package supports connecting to local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end, and provides an interface to Spark's built-in machine learning algorithms.

Maintained by Edgar Ruiz. Last updated 11 days ago.

apache-spark distributed dplyr ide livy machine-learning remote-clusters spark sparklyr

959 stars 15.20 score 4.0k scripts 21 dependents

cynkra

dm:Relational Data Models

Provides tools for working with multiple related tables, stored as data frames or in a relational database. Multiple tables (data and metadata) are stored in a compound object, which can then be manipulated with a pipe-friendly syntax.

Maintained by Kirill Müller. Last updated 3 months ago.

data-model data-warehousing datawarehousing dbi dbplyr relational-databases

511 stars 14.81 score 410 scripts 8 dependents

thomasp85

tidygraph:A Tidy API for Graph Manipulation

A graph, while not "tidy" in itself, can be thought of as two tidy data frames describing node and edge data respectively. 'tidygraph' provides an approach to manipulate these two virtual data frames using the API defined in the 'dplyr' package, as well as provides tidy interfaces to a lot of common graph algorithms.

Maintained by Thomas Lin Pedersen. Last updated 2 months ago.

graph-algorithms graph-manipulation igraph network-analysis tidyverse cpp

553 stars 14.74 score 4.6k scripts 136 dependents

dieghernan

tidyterra:'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects

Extension of the 'tidyverse' for 'SpatRaster' and 'SpatVector' objects of the 'terra' package. It includes also new 'geom_' functions that provide a convenient way of visualizing 'terra' objects with 'ggplot2'.

Maintained by Diego Hernangómez. Last updated 4 days ago.

terra ggplot-extension r-spatial rspatial

190 stars 13.59 score 1.9k scripts 25 dependents

billdenney

PKNCA:Perform Pharmacokinetic Non-Compartmental Analysis

Compute standard Non-Compartmental Analysis (NCA) parameters for typical pharmacokinetic analyses and summarize them.

Maintained by Bill Denney. Last updated 29 days ago.

nca noncompartmental-analysis pharmacokinetics

73 stars 12.61 score 214 scripts 4 dependents

ropensci

treeio:Base Classes and Functions for Phylogenetic Tree Input and Output

'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

Maintained by Guangchuang Yu. Last updated 5 months ago.

software annotation clustering dataimport datarepresentation alignment multiplesequencealignment phylogenetics exporter parser phylogenetic-trees

102 stars 12.46 score 1.3k scripts 122 dependents

bioc

mia:Microbiome analysis

mia implements tools for microbiome analysis based on the SummarizedExperiment, SingleCellExperiment and TreeSummarizedExperiment infrastructure. Data wrangling and analysis in the context of taxonomic data is the main scope. Additional functions for common task are implemented such as community indices calculation and summarization.

Maintained by Tuomas Borman. Last updated 15 days ago.

microbiome software dataimport analysis bioconductor

52 stars 11.50 score 316 scripts 5 dependents

markfairbanks

tidytable:Tidy Interface to 'data.table'

A tidy interface to 'data.table', giving users the speed of 'data.table' while using tidyverse-like syntax.

Maintained by Mark Fairbanks. Last updated 2 months ago.

460 stars 11.39 score 732 scripts 11 dependents

nathaneastwood

poorman:A Poor Man's Dependency Free Recreation of 'dplyr'

A replication of key functionality from 'dplyr' and the wider 'tidyverse' using only 'base'.

Maintained by Nathan Eastwood. Last updated 1 years ago.

base-r data-manipulation grammar

342 stars 10.79 score 156 scripts 27 dependents

elbersb

tidylog:Logging for 'dplyr' and 'tidyr' Functions

Provides feedback about 'dplyr' and 'tidyr' operations.

Maintained by Benjamin Elbers. Last updated 10 months ago.

dplyr tidyr tidyverse wrapper-functions

593 stars 10.23 score 1.7k scripts

bioc

tidybulk:Brings transcriptomics to the tidyverse

This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion.

Maintained by Stefano Mangiola. Last updated 11 days ago.

assaydomain infrastructure rnaseq differentialexpression geneexpression normalization clustering qualitycontrol sequencing transcription transcriptomics bioconductor bulk-transcriptional-analyses deseq2 differential-expression edger ensembl-ids entrez gene-symbols gsea mds-dimensions pca pipe redundancy tibble tidy tidy-data tidyverse transcripts tsne

171 stars 9.57 score 172 scripts 1 dependents

adibender

pammtools:Piece-Wise Exponential Additive Mixed Modeling Tools for Survival Analysis

The Piece-wise exponential (Additive Mixed) Model (PAMM; Bender and others (2018) <doi: 10.1177/1471082X17748083>) is a powerful model class for the analysis of survival (or time-to-event) data, based on Generalized Additive (Mixed) Models (GA(M)Ms). It offers intuitive specification and robust estimation of complex survival models with stratified baseline hazards, random effects, time-varying effects, time-dependent covariates and cumulative effects (Bender and others (2019)), as well as support for left-truncated data as well as competing risks, recurrent events and multi-state settings. pammtools provides tidy workflow for survival analysis with PAMMs, including data simulation, transformation and other functions for data preprocessing and model post-processing as well as visualization.

Maintained by Andreas Bender. Last updated 5 days ago.

additive-models pamm pammtools piece-wise-exponential survival-analysis

48 stars 9.32 score 310 scripts 8 dependents

somalogic

SomaDataIO:Input/Output 'SomaScan' Data

Load and export 'SomaScan' data via the 'Standard BioTools, Inc.' structured text file called an ADAT ('*.adat'). For file format see <https://github.com/SomaLogic/SomaLogic-Data/blob/main/README.md>. The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.

Maintained by Caleb Scheidel. Last updated 2 months ago.

adat proteomics proteomics-data-analysis somascan

26 stars 7.71 score 132 scripts

statisfactions

simpr:Flexible 'Tidyverse'-Friendly Simulations

A general, 'tidyverse'-friendly framework for simulation studies, design analysis, and power analysis. Specify data generation, define varying parameters, generate data, fit models, and tidy model results in a single pipeline, without needing loops or custom functions.

Maintained by Ethan Brown. Last updated 9 months ago.

43 stars 6.89 score 30 scripts

randrescastaneda

joyn:Tool for Diagnosis of Tables Joins and Complementary Join Features

Tool for diagnosing table joins. It combines the speed of `collapse` and `data.table`, the flexibility of `dplyr`, and the diagnosis and features of the `merge` command in `Stata`.

Maintained by R.Andres Castaneda. Last updated 3 months ago.

join merge

9 stars 6.83 score 31 scripts

mattheaphy

actxps:Create Actuarial Experience Studies: Prepare Data, Summarize Results, and Create Reports

Experience studies are used by actuaries to explore historical experience across blocks of business and to inform assumption setting activities. This package provides functions for preparing data, creating studies, visualizing results, and beginning assumption development. Experience study methods, including exposure calculations, are described in: Atkinson & McGarry (2016) "Experience Study Calculations" <https://www.soa.org/49378a/globalassets/assets/files/research/experience-study-calculations.pdf>. The limited fluctuation credibility method used by the 'exp_stats()' function is described in: Herzog (1999, ISBN:1-56698-374-6) "Introduction to Credibility Theory".

Maintained by Matt Heaphy. Last updated 3 months ago.

14 stars 6.38 score 23 scripts

hope-data-science

tidyft:Fast and Memory Efficient Data Operations in Tidy Syntax

Tidy syntax for 'data.table', using modification by reference whenever possible. This toolkit is designed for big data analysis in high-performance desktop or laptop computers. The syntax of the package is similar or identical to 'tidyverse'. It is user friendly, memory efficient and time saving. For more information, check its ancestor package 'tidyfst'.

Maintained by Tian-Yuan Huang. Last updated 6 months ago.

35 stars 6.25 score 34 scripts

asardaes

table.express:Build 'data.table' Expressions with Data Manipulation Verbs

A specialization of 'dplyr' data manipulation verbs that parse and build expressions which are ultimately evaluated by 'data.table', letting it handle all optimizations. A set of additional verbs is also provided to facilitate some common operations on a subset of the data.

Maintained by Alexis Sarda-Espinosa. Last updated 2 years ago.

65 stars 5.81 score 8 scripts

r-tidy-remote-sensing

tidyrgee:'tidyverse' Methods for 'Earth Engine'

Provides 'tidyverse' methods for wrangling and analyzing 'Earth Engine' <https://earthengine.google.com/> data. These methods help the user with filtering, joining and summarising 'Earth Engine' image collections.

Maintained by Zack Arno. Last updated 2 years ago.

48 stars 5.53 score 140 scripts