Showing 2 of total 2 results (show query)
grunwaldlab
metacoder:Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
Reads, plots, and manipulates large taxonomic data sets, like those generated from modern high-throughput sequencing, such as metabarcoding (i.e. amplification metagenomics, 16S metagenomics, etc). It provides a tree-based visualization called "heat trees" used to depict statistics for every taxon in a taxonomy using color and size. It also provides various functions to do common tasks in microbiome bioinformatics on data in the 'taxmap' format defined by the 'taxa' package. The 'metacoder' package is described in the publication by Foster et al. (2017) <doi:10.1371/journal.pcbi.1005404>.
Maintained by Zachary Foster. Last updated 2 months ago.
community-diversityhierarchicalmetabarcodingpcrtaxonomytreescpp
140 stars 9.64 score 328 scripts
trangdata
treeheatr:Heatmap-Integrated Decision Tree Visualizations
Creates interpretable decision tree visualizations with the data represented as a heatmap at the tree's leaf nodes. 'treeheatr' utilizes the customizable 'ggparty' package for drawing decision trees.
Maintained by Trang Le. Last updated 2 years ago.
datavizdecision-treesggplotheatmapvisualization
57 stars 5.71 score 18 scripts