Showing 5 of total 5 results (show query)
bioc
microbiome:Microbiome Analytics
Utilities for microbiome analysis.
Maintained by Leo Lahti. Last updated 5 months ago.
metagenomicsmicrobiomesequencingsystemsbiologyhitchiphitchip-atlashuman-microbiomemicrobiologymicrobiome-analysisphyloseqpopulation-study
293 stars 12.51 score 2.0k scripts 5 dependents
r-forge
plasma:Partial LeAst Squares for Multiomic Analysis
Contains tools for supervised analyses of incomplete, overlapping multiomics datasets. Applies partial least squares in multiple steps to find models that predict survival outcomes. See Yamaguchi et al. (2023) <doi:10.1101/2023.03.10.532096>.
Maintained by Kevin R. Coombes. Last updated 2 months ago.
4.97 score 13 scripts
aroneklund
squash:Color-Based Plots for Multivariate Visualization
Functions for color-based visualization of multivariate data, i.e. colorgrams or heatmaps. Lower-level functions map numeric values to colors, display a matrix as an array of colors, and draw color keys. Higher-level plotting functions generate a bivariate histogram, a dendrogram aligned with a color-coded matrix, a triangular distance matrix, and more.
Maintained by Aron C. Eklund. Last updated 2 years ago.
2 stars 4.74 score 46 scripts 4 dependents
maressyl
LPS:Linear Predictor Score, for Binary Inference from Multiple Continuous Variables
An implementation of the Linear Predictor Score approach, as initiated by Radmacher et al. (J Comput Biol 2001) and enhanced by Wright et al. (PNAS 2003) for gene expression signatures. Several tools for unsupervised clustering of gene expression data are also provided.
Maintained by Sylvain Mareschal. Last updated 4 years ago.
1 stars 3.74 score 11 scripts
cran
Thresher:Threshing and Reaping for Principal Components
Defines the classes used to identify outliers (threshing) and compute the number of significant principal components and number of clusters (reaping) in a joint application of PCA and hierarchical clustering. See Wang et al., 2018, <doi:10.1186/s12859-017-1998-9>.
Maintained by Kevin R. Coombes. Last updated 11 months ago.
3.56 score 3 dependents