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cran

gprofiler2:Interface to the 'g:Profiler' Toolset

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.

Maintained by Liis Kolberg. Last updated 1 years ago.

4 stars 5.85 score 16 dependents

korogenoest

gProfileR:Interface to the 'g:Profiler' Toolkit

This package has been deprecated and will not be updated. New users should use the package 'gprofiler2' (<https://CRAN.R-project.org/package=gprofiler2>) for up-to-date data and improved functionality. Functional enrichment analysis, gene identifier conversion and mapping homologous genes across related organisms via the 'g:Profiler' toolkit (<https://biit.cs.ut.ee/gprofiler/>).

Maintained by Ivan Kuzmin. Last updated 5 years ago.

1 stars 3.88 score 250 scripts 1 dependents

phylotastic

rphylotastic:An R Interface to 'Phylotastic' Web Services

This wraps the 'Phylotastic' services APIs described on Web Services at <www.phylotastic.org>. The main use case is to return a phylogenetic tree for a set of species, but the services also include ways to extract species names from web pages, perform taxonomic name resolution, retrieve a list of all descendant species of a taxon, find images of a species, and more.

Maintained by Brian OMeara. Last updated 2 years ago.

2.28 score 19 scripts

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