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karissawhiting
cbioportalR:Browse and Query Clinical and Genomic Data from cBioPortal
Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly functions that wrap 'cBioPortal's' existing API endpoints <https://www.cbioportal.org/api/swagger-ui/index.html>. Users can browse and query genomic data on mutations, copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'), microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study). See <https://www.cbioportal.org/> and Gao et al., (2013) <doi:10.1126/scisignal.2004088> for more information on the cBioPortal web resource.
Maintained by Karissa Whiting. Last updated 4 months ago.
22 stars 6.72 score 20 scripts
arminstroebel
atable:Create Tables for Reporting Clinical Trials
Create Tables for Reporting Clinical Trials. Calculates descriptive statistics and hypothesis tests, arranges the results in a table ready for reporting with LaTeX, HTML or Word.
Maintained by Armin Ströbel. Last updated 4 years ago.
9 stars 4.74 score 41 scripts