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bioc
mia:Microbiome analysis
mia implements tools for microbiome analysis based on the SummarizedExperiment, SingleCellExperiment and TreeSummarizedExperiment infrastructure. Data wrangling and analysis in the context of taxonomic data is the main scope. Additional functions for common task are implemented such as community indices calculation and summarization.
Maintained by Tuomas Borman. Last updated 23 hours ago.
microbiomesoftwaredataimportanalysisbioconductorcpp
51 stars 11.52 score 316 scripts 5 dependents
r-forge
plasma:Partial LeAst Squares for Multiomic Analysis
Contains tools for supervised analyses of incomplete, overlapping multiomics datasets. Applies partial least squares in multiple steps to find models that predict survival outcomes. See Yamaguchi et al. (2023) <doi:10.1101/2023.03.10.532096>.
Maintained by Kevin R. Coombes. Last updated 2 months ago.
4.97 score 13 scripts