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bioc
KEGGgraph:KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.
Maintained by Jitao David Zhang. Last updated 5 months ago.
pathwaysgraphandnetworkvisualizationkegg
9.09 score 114 scripts 23 dependents
cran
TPEA:A Novel Topology-Based Pathway Enrichment Analysis Approach
We described a novel Topology-based pathway enrichment analysis, which integrated the global position of the nodes and the topological property of the pathways in Kyoto Encyclopedia of Genes and Genomes Database. We also provide some functions to obtain the latest information about pathways to finish pathway enrichment analysis using this method.
Maintained by Wei Jiang. Last updated 8 years ago.
1 stars 1.48 score 1 dependents