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sizespectrum
mizer:Dynamic Multi-Species Size Spectrum Modelling
A set of classes and methods to set up and run multi-species, trait based and community size spectrum ecological models, focused on the marine environment.
Maintained by Gustav Delius. Last updated 2 months ago.
ecosystem-modelfish-population-dynamicsfisheriesfisheries-managementmarine-ecosystempopulation-dynamicssimulationsize-structurespecies-interactionstransport-equationcpp
39 stars 9.41 score 207 scripts
bioc
BiGGR:Constraint based modeling in R using metabolic reconstruction databases
This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.
Maintained by Anand K. Gavai. Last updated 5 months ago.
systems biologypathwaynetworkgraphandnetworkvisualizationmetabolomics
4.67 score 58 scripts
eborgnine
diseasemapping:Modelling Spatial Variation in Disease Risk for Areal Data
Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using 'INLA'. For details see Brown (2015) <doi:10.18637/jss.v063.i12>.
Maintained by Patrick Brown. Last updated 1 years ago.
2.46 score 29 scripts