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yulab-smu
tidytree:A Tidy Tool for Phylogenetic Tree Data Manipulation
Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Maintained by Guangchuang Yu. Last updated 8 months ago.
phylogenetic-treetidyversetree-data
56 stars 13.36 score 584 scripts 128 dependents
ropensci
treeio:Base Classes and Functions for Phylogenetic Tree Input and Output
'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.
Maintained by Guangchuang Yu. Last updated 5 months ago.
softwareannotationclusteringdataimportdatarepresentationalignmentmultiplesequencealignmentphylogeneticsexporterparserphylogenetic-trees
102 stars 12.46 score 1.3k scripts 122 dependents