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bioc
sesame:SEnsible Step-wise Analysis of DNA MEthylation BeadChips
Tools For analyzing Illumina Infinium DNA methylation arrays. SeSAMe provides utilities to support analyses of multiple generations of Infinium DNA methylation BeadChips, including preprocessing, quality control, visualization and inference. SeSAMe features accurate detection calling, intelligent inference of ethnicity, sex and advanced quality control routines.
Maintained by Wanding Zhou. Last updated 3 months ago.
dnamethylationmethylationarraypreprocessingqualitycontrolbioinformaticsdna-methylationmicroarray
69 stars 9.08 score 258 scripts 1 dependentsbioc
regioneR:Association analysis of genomic regions based on permutation tests
regioneR offers a statistical framework based on customizable permutation tests to assess the association between genomic region sets and other genomic features.
Maintained by Bernat Gel. Last updated 5 months ago.
geneticschipseqdnaseqmethylseqcopynumbervariation
9.01 score 2.7k scripts 21 dependents
cran
gmGeostats:Geostatistics for Compositional Analysis
Support for geostatistical analysis of multivariate data, in particular data with restrictions, e.g. positive amounts, compositions, distributional data, microstructural data, etc. It includes descriptive analysis and modelling for such data, both from a two-point Gaussian perspective and multipoint perspective. The methods mainly follow Tolosana-Delgado, Mueller and van den Boogaart (2018) <doi:10.1007/s11004-018-9769-3>.
Maintained by K. Gerald van den Boogaart. Last updated 2 years ago.
1 stars 3.00 score