Showing 8 of total 8 results (show query)
bioc
minfi:Analyze Illumina Infinium DNA methylation arrays
Tools to analyze & visualize Illumina Infinium methylation arrays.
Maintained by Kasper Daniel Hansen. Last updated 4 months ago.
immunooncologydnamethylationdifferentialmethylationepigeneticsmicroarraymethylationarraymultichanneltwochanneldataimportnormalizationpreprocessingqualitycontrol
60 stars 12.82 score 996 scripts 27 dependentsbioc
shinyMethyl:Interactive visualization for Illumina methylation arrays
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
Maintained by Jean-Philippe Fortin. Last updated 5 months ago.
dnamethylationmicroarraytwochannelpreprocessingqualitycontrolmethylationarray
5 stars 7.34 score 42 scripts
robinhankin
onion:Octonions and Quaternions
Quaternions and Octonions are four- and eight- dimensional extensions of the complex numbers. They are normed division algebras over the real numbers and find applications in spatial rotations (quaternions), and string theory and relativity (octonions). The quaternions are noncommutative and the octonions nonassociative. See the package vignette for more details.
Maintained by Robin K. S. Hankin. Last updated 2 months ago.
6 stars 7.27 score 43 scripts 3 dependentsbioc
oligoClasses:Classes for high-throughput arrays supported by oligo and crlmm
This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
Maintained by Benilton Carvalho. Last updated 5 months ago.
5.86 score 93 scripts 17 dependents
fmmgroupva
FMM:Rhythmic Patterns Modeling by FMM Models
Provides a collection of functions to fit and explore single, multi-component and restricted Frequency Modulated Moebius (FMM) models. 'FMM' is a nonlinear parametric regression model capable of fitting non-sinusoidal shapes in rhythmic patterns. Details about the mathematical formulation of 'FMM' models can be found in Rueda et al. (2019) <doi:10.1038/s41598-019-54569-1>.
Maintained by Itziar Fernandez. Last updated 16 hours ago.
2 stars 5.60 scorerobinhankin
MM:The Multiplicative Multinomial Distribution
Various utilities for the Multiplicative Multinomial distribution.
Maintained by Robin K. S. Hankin. Last updated 11 months ago.
4.64 score 22 scripts
arappold
docopulae:Optimal Designs for Copula Models
A direct approach to optimal designs for copula models based on the Fisher information. Provides flexible functions for building joint PDFs, evaluating the Fisher information and finding optimal designs. It includes an extensible solution to summation and integration called 'nint', functions for transforming, plotting and comparing designs, as well as a set of tools for common low-level tasks.
Maintained by Andreas Rappold. Last updated 6 years ago.
3.18 score 30 scripts
gsantafe
bde:Bounded Density Estimation
A collection of S4 classes which implements different methods to estimate and deal with densities in bounded domains. That is, densities defined within the interval [lower.limit, upper.limit], where lower.limit and upper.limit are values that can be set by the user.
Maintained by Guzman Santafe. Last updated 3 years ago.
2.37 score 26 scripts 3 dependents