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bioc
GDSArray:Representing GDS files as array-like objects
GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed.
Maintained by Xiuwen Zheng. Last updated 14 days ago.
infrastructuredatarepresentationsequencinggenotypingarray
5 stars 6.78 score 8 scripts 2 dependentsbioc
SeqSQC:A bioconductor package for sample quality check with next generation sequencing data
The SeqSQC is designed to identify problematic samples in NGS data, including samples with gender mismatch, contamination, cryptic relatedness, and population outlier.
Maintained by Qian Liu. Last updated 5 months ago.
experiment datahomo_sapiens_datasequencing dataproject1000genomesgenome
5.26 score 2 scripts