Showing 3 of total 3 results (show query)
dusadrian
venn:Draw Venn Diagrams
A close to zero dependency package to draw and display Venn diagrams up to 7 sets, and any Boolean union of set intersections.
Maintained by Adrian Dusa. Last updated 6 months ago.
30 stars 9.90 score 508 scripts 13 dependents
bioc
scDDboost:A compositional model to assess expression changes from single-cell rna-seq data
scDDboost is an R package to analyze changes in the distribution of single-cell expression data between two experimental conditions. Compared to other methods that assess differential expression, scDDboost benefits uniquely from information conveyed by the clustering of cells into cellular subtypes. Through a novel empirical Bayesian formulation it calculates gene-specific posterior probabilities that the marginal expression distribution is the same (or different) between the two conditions. The implementation in scDDboost treats gene-level expression data within each condition as a mixture of negative binomial distributions.
Maintained by Xiuyu Ma. Last updated 17 days ago.
singlecellsoftwareclusteringsequencinggeneexpressiondifferentialexpressionbayesiancpp
4.68 score 19 scriptsbioc
methylInheritance:Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.
Maintained by Astrid Deschênes. Last updated 5 months ago.
biologicalquestionepigeneticsdnamethylationdifferentialmethylationmethylseqsoftwareimmunooncologystatisticalmethodwholegenomesequencinganalysisbioconductorbioinformaticscpgdifferentially-methylated-elementsinheritancemonte-carlo-samplingpermutation
4.60 score 1 scripts