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bioc
scuttle:Single-Cell RNA-Seq Analysis Utilities
Provides basic utility functions for performing single-cell analyses, focusing on simple normalization, quality control and data transformations. Also provides some helper functions to assist development of other packages.
Maintained by Aaron Lun. Last updated 5 months ago.
immunooncologysinglecellrnaseqqualitycontrolpreprocessingnormalizationtranscriptomicsgeneexpressionsequencingsoftwaredataimportopenblascpp
10.16 score 1.7k scripts 83 dependentsbioc
DropletUtils:Utilities for Handling Single-Cell Droplet Data
Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.
Maintained by Jonathan Griffiths. Last updated 4 months ago.
immunooncologysinglecellsequencingrnaseqgeneexpressiontranscriptomicsdataimportcoveragezlibcpp
10.01 score 2.7k scripts 9 dependents