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bioc
TSCAN:Tools for Single-Cell Analysis
Provides methods to perform trajectory analysis based on a minimum spanning tree constructed from cluster centroids. Computes pseudotemporal cell orderings by mapping cells in each cluster (or new cells) to the closest edge in the tree. Uses linear modelling to identify differentially expressed genes along each path through the tree. Several plotting and interactive visualization functions are also implemented.
Maintained by Zhicheng Ji. Last updated 5 months ago.
geneexpressionvisualizationgui
7.58 score 207 scripts 3 dependents
guokai8
microbial:Do 16s Data Analysis and Generate Figures
Provides functions to enhance the available statistical analysis procedures in R by providing simple functions to analysis and visualize the 16S rRNA data.Here we present a tutorial with minimum working examples to demonstrate usage and dependencies.
Maintained by Kai Guo. Last updated 6 months ago.
softwaregraphandnetworkmicrobiomemicrobiome-analysis
13 stars 5.81 score 25 scripts