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core-bioinformatics

ClustAssess:Tools for Assessing Clustering

A set of tools for evaluating clustering robustness using proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014) <doi:10.1038/srep06207>), as well as similarity across methods and method stability using element-centric clustering comparison (Gates et al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package enables stability-based parameter assessment for graph-based clustering pipelines typical in single-cell data analysis.

Maintained by Andi Munteanu. Last updated 2 months ago.

software singlecell rnaseq atacseq normalization preprocessing dimensionreduction visualization qualitycontrol clustering classification annotation geneexpression differentialexpression bioinformatics genomics machine-learning parameter-optimization robustness single-cell unsupervised-learning cpp

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