Showing 6 of total 6 results (show query)
florianhartig
BayesianTools:General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
General-purpose MCMC and SMC samplers, as well as plots and diagnostic functions for Bayesian statistics, with a particular focus on calibrating complex system models. Implemented samplers include various Metropolis MCMC variants (including adaptive and/or delayed rejection MH), the T-walk, two differential evolution MCMCs, two DREAM MCMCs, and a sequential Monte Carlo (SMC) particle filter.
Maintained by Florian Hartig. Last updated 1 years ago.
bayesecological-modelsmcmcoptimizationsmcsystems-biologycpp
124 stars 10.18 score 580 scripts 5 dependents
pecanproject
PEcAn.assim.batch:PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Maintained by Istem Fer. Last updated 3 hours ago.
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp
216 stars 9.96 score 20 scripts 2 dependents
bioc
INSPEcT:Modeling RNA synthesis, processing and degradation with RNA-seq data
INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or steady-state conditions, with or without the support of nascent RNA data.
Maintained by Stefano de Pretis. Last updated 5 months ago.
sequencingrnaseqgeneregulationtimecoursesystemsbiology
4.38 score 9 scriptsbioc
TIN:Transcriptome instability analysis
The TIN package implements a set of tools for transcriptome instability analysis based on exon expression profiles. Deviating exon usage is studied in the context of splicing factors to analyse to what degree transcriptome instability is correlated to splicing factor expression. In the transcriptome instability correlation analysis, the data is compared to both random permutations of alternative splicing scores and expression of random gene sets.
Maintained by Bjarne Johannessen. Last updated 5 months ago.
exonarraymicroarraygeneexpressionalternativesplicinggeneticsdifferentialsplicing
4.30 score 1 scriptsbioc
RUVcorr:Removal of unwanted variation for gene-gene correlations and related analysis
RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.
Maintained by Saskia Freytag. Last updated 5 months ago.
3.60 score 8 scripts
ivanlizaga
fingerPro:Sediment Source Fingerprinting
Quantifies the provenance of the sediments in a catchment or study area. Based on a comprehensive characterization of the sediment sources and the end sediment mixtures a mixing model algorithm is applied to the sediment mixtures in order to estimate the relative contribution of each potential source. The package includes several statistical methods such as Kruskal-Wallis test, discriminant function analysis ('DFA'), principal component plot ('PCA') to select the optimal subset of tracer properties. The variability within each sediment source is also considered to estimate the statistical distribution of the sources contribution.
Maintained by Ivan Lizaga. Last updated 7 years ago.
1.11 score 13 scripts