Showing 1 of total 1 results (show query)
bioc
philr:Phylogenetic partitioning based ILR transform for metagenomics data
PhILR is short for Phylogenetic Isometric Log-Ratio Transform. This package provides functions for the analysis of compositional data (e.g., data representing proportions of different variables/parts). Specifically this package allows analysis of compositional data where the parts can be related through a phylogenetic tree (as is common in microbiota survey data) and makes available the Isometric Log Ratio transform built from the phylogenetic tree and utilizing a weighted reference measure.
Maintained by Justin Silverman. Last updated 5 months ago.
immunooncologysequencingmicrobiomemetagenomicssoftware
19 stars 7.99 score 95 scripts