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tlverse
origami:Generalized Framework for Cross-Validation
A general framework for the application of cross-validation schemes to particular functions. By allowing arbitrary lists of results, origami accommodates a range of cross-validation applications. This implementation was first described by Coyle and Hejazi (2018) <doi:10.21105/joss.00512>.
Maintained by Jeremy Coyle. Last updated 3 years ago.
cross-validationmachine-learning
27 stars 9.66 score 492 scripts 19 dependents
bioc
regionalpcs:Summarizing Regional Methylation with Regional Principal Components Analysis
Functions to summarize DNA methylation data using regional principal components. Regional principal components are computed using principal components analysis within genomic regions to summarize the variability in methylation levels across CpGs. The number of principal components is chosen using either the Marcenko-Pasteur or Gavish-Donoho method to identify relevant signal in the data.
Maintained by Tiffany Eulalio. Last updated 5 months ago.
dnamethylationdifferentialmethylationstatisticalmethodsoftwaremethylationarray
2 stars 4.30 score 4 scripts
thmild
keyperm:Keyword Analysis Using Permutation Tests
Fast implementation of permutation tests for keyword analysis in corpus linguistics. The aim is to identify words that are significantly more frequent in one corpus than in another. The method is described in Mildenberger (2023) <arXiv:2308.13383>.
Maintained by Thoralf Mildenberger. Last updated 2 years ago.
2.70 score 3 scripts
thezetner
Plasmidprofiler:Visualization of Plasmid Profile Results
Contains functions developed to combine the results of querying a plasmid database using short-read sequence typing with the results of a blast analysis against the query results.
Maintained by Adrian Zetner. Last updated 8 years ago.
1.43 score 27 scripts