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bioc
CellBarcode:Cellular DNA Barcode Analysis toolkit
The package CellBarcode performs Cellular DNA Barcode analysis. It can handle all kinds of DNA barcodes, as long as the barcode is within a single sequencing read and has a pattern that can be matched by a regular expression. \code{CellBarcode} can handle barcodes with flexible lengths, with or without UMI (unique molecular identifier). This tool also can be used for pre-processing some amplicon data such as CRISPR gRNA screening, immune repertoire sequencing, and metagenome data.
Maintained by Wenjie Sun. Last updated 11 days ago.
preprocessingqualitycontrolsequencingcrisprampliconamplicon-sequencingcellular-barcodecpp
1 stars 5.86 score 40 scripts