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cran
survivalAnalysis:High-Level Interface for Survival Analysis and Associated Plots
A high-level interface to perform survival analysis, including Kaplan-Meier analysis and log-rank tests and Cox regression. Aims at providing a clear and elegant syntax, support for use in a pipeline, structured output and plotting. Builds upon the 'survminer' package for Kaplan-Meier plots and provides a customizable implementation for forest plots. Kaplan & Meier (1958) <doi:10.1080/01621459.1958.10501452> Cox (1972) <JSTOR:2985181> Peto & Peto (1972) <JSTOR:2344317>.
Maintained by Marcel Wiesweg. Last updated 3 years ago.
3 stars 4.43 score 1 dependents
zytohmgu
CFAcoop:Colony Formation Assay: Taking into Account Cellular Cooperation
Cellular cooperation compromises the plating efficiency-based analysis of clonogenic survival data. This tool provides functions that enable a robust analysis of colony formation assay (CFA) data in presence or absence of cellular cooperation. The implemented method has been described in Brix et al. (2020). (Brix, N., Samaga, D., Hennel, R. et al. "The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation." Radiat Oncol 15, 248 (2020). <doi:10.1186/s13014-020-01697-y>) Power regression for parameter estimation, calculation of survival fractions, uncertainty analysis and plotting functions are provided.
Maintained by Daniel Samaga. Last updated 4 years ago.
3.00 score 3 scripts