Showing 4 of total 4 results (show query)
stemangiola
tidyseurat:Brings Seurat to the Tidyverse
It creates an invisible layer that allow to see the 'Seurat' object as tibble and interact seamlessly with the tidyverse.
Maintained by Stefano Mangiola. Last updated 8 months ago.
assaydomaininfrastructurernaseqdifferentialexpressiongeneexpressionnormalizationclusteringqualitycontrolsequencingtranscriptiontranscriptomicsdplyrggplot2pcapurrrsctseuratsingle-cellsingle-cell-rna-seqtibbletidyrtidyversetranscriptstsneumap
159 stars 9.48 score 398 scripts 1 dependents
bioc
tidySingleCellExperiment:Brings SingleCellExperiment to the Tidyverse
'tidySingleCellExperiment' is an adapter that abstracts the 'SingleCellExperiment' container in the form of a 'tibble'. This allows *tidy* data manipulation, nesting, and plotting. For example, a 'tidySingleCellExperiment' is directly compatible with functions from 'tidyverse' packages `dplyr` and `tidyr`, as well as plotting with `ggplot2` and `plotly`. In addition, the package provides various utility functions specific to single-cell omics data analysis (e.g., aggregation of cell-level data to pseudobulks).
Maintained by Stefano Mangiola. Last updated 5 months ago.
assaydomaininfrastructurernaseqdifferentialexpressionsinglecellgeneexpressionnormalizationclusteringqualitycontrolsequencingbioconductordplyrggplot2plotlysingle-cell-rna-seqsingle-cell-sequencingsinglecellexperimenttibbletidyrtidyverse
36 stars 8.86 score 125 scripts 2 dependentsbioc
tidySpatialExperiment:SpatialExperiment with tidy principles
tidySpatialExperiment provides a bridge between the SpatialExperiment package and the tidyverse ecosystem. It creates an invisible layer that allows you to interact with a SpatialExperiment object as if it were a tibble; enabling the use of functions from dplyr, tidyr, ggplot2 and plotly. But, underneath, your data remains a SpatialExperiment object.
Maintained by William Hutchison. Last updated 5 months ago.
infrastructurernaseqgeneexpressionsequencingspatialtranscriptomicssinglecell
6 stars 5.88 score 12 scriptsstemangiola
ttservice:A Service for Tidy Transcriptomics Software Suite
It provides generic methods that are used by more than one package, avoiding conflicts. This package will be imported by 'tidySingleCellExperiment' and 'tidyseurat'.
Maintained by Stefano Mangiola. Last updated 10 months ago.
3.26 score 6 dependents