NetSAM:Network Seriation And Modularization
The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a weighted or unweighted
network as an input, performs network seriation and
modularization analysis, and generates as files that can be
used as an input for the one-dimensional network visualization
tool NetGestalt (http://www.netgestalt.org) or other network
analysis. The NetSAM package can also generate correlation
network (e.g. co-expression network) based on the input matrix
data, perform seriation and modularization analysis for the
correlation network and calculate the associations between the
sample features and modules or identify the associated GO terms
for the modules.
