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bioc
GSCA:GSCA: Gene Set Context Analysis
GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.
Maintained by Zhicheng Ji. Last updated 5 months ago.
geneexpressionvisualizationgui
5.00 score 5 scriptsbioc
ASGSCA:Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models
The package provides tools to model and test the association between multiple genotypes and multiple traits, taking into account the prior biological knowledge. Genes, and clinical pathways are incorporated in the model as latent variables. The method is based on Generalized Structured Component Analysis (GSCA).
Maintained by Hela Romdhani. Last updated 5 months ago.
3.30 score 3 scripts