Showing 114 of total 114 results (show query)
rstudio
rsconnect:Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io', and 'RPubs'
Programmatic deployment interface for 'RPubs', 'shinyapps.io', and 'Posit Connect'. Supported content types include R Markdown documents, Shiny applications, Plumber APIs, plots, and static web content.
Maintained by Aron Atkins. Last updated 28 days ago.
139 stars 14.90 score 3.1k scripts 6 dependentsrstudio
learnr:Interactive Tutorials for R
Create interactive tutorials using R Markdown. Use a combination of narrative, figures, videos, exercises, and quizzes to create self-paced tutorials for learning about R and R packages.
Maintained by Garrick Aden-Buie. Last updated 7 months ago.
interactivepythonrmarkdownshinysqlteachingtutorial
713 stars 14.79 score 6.5k scripts 27 dependentsrstudio
sortable:Drag-and-Drop in 'shiny' Apps with 'SortableJS'
Enables drag-and-drop behaviour in Shiny apps, by exposing the functionality of the 'SortableJS' <https://sortablejs.github.io/Sortable/> JavaScript library as an 'htmlwidget'. You can use this in Shiny apps and widgets, 'learnr' tutorials as well as R Markdown. In addition, provides a custom 'learnr' question type - 'question_rank()' - that allows ranking questions with drag-and-drop.
Maintained by Andrie de Vries. Last updated 7 months ago.
135 stars 11.62 score 368 scripts 13 dependents
pik-piam
madrat:May All Data be Reproducible and Transparent (MADRaT) *
Provides a framework which should improve reproducibility and transparency in data processing. It provides functionality such as automatic meta data creation and management, rudimentary quality management, data caching, work-flow management and data aggregation. * The title is a wish not a promise. By no means we expect this package to deliver everything what is needed to achieve full reproducibility and transparency, but we believe that it supports efforts in this direction.
Maintained by Jan Philipp Dietrich. Last updated 9 days ago.
15 stars 11.03 score 83 scripts 38 dependents
cjvanlissa
worcs:Workflow for Open Reproducible Code in Science
Create reproducible and transparent research projects in 'R'. This package is based on the Workflow for Open Reproducible Code in Science (WORCS), a step-by-step procedure based on best practices for Open Science. It includes an 'RStudio' project template, several convenience functions, and all dependencies required to make your project reproducible and transparent. WORCS is explained in the tutorial paper by Van Lissa, Brandmaier, Brinkman, Lamprecht, Struiksma, & Vreede (2021). <doi:10.3233/DS-210031>.
Maintained by Caspar J. Van Lissa. Last updated 24 days ago.
83 stars 9.26 score 59 scripts
r-spatial
link2GI:Linking Geographic Information Systems, Remote Sensing and Other Command Line Tools
Functions and tools for using open GIS and remote sensing command-line interfaces in a reproducible environment.
Maintained by Chris Reudenbach. Last updated 4 months ago.
26 stars 8.99 score 78 scripts 1 dependents
appsilon
rhino:A Framework for Enterprise Shiny Applications
A framework that supports creating and extending enterprise Shiny applications using best practices.
Maintained by Kamil ลปyลa. Last updated 19 hours ago.
305 stars 8.99 score 145 scriptspik-piam
remind2:The REMIND R package (2nd generation)
Contains the REMIND-specific routines for data and model output manipulation.
Maintained by Renato Rodrigues. Last updated 15 hours ago.
8.87 score 161 scripts 5 dependents
ppbds
tutorial.helpers:Helper Functions for Creating Tutorials
Helper functions for creating, editing, and testing tutorials created with the 'learnr' package. Provides a simple method for allowing students to download their answers to tutorial questions. For examples of its use, see the 'r4ds.tutorials' package.
Maintained by David Kane. Last updated 11 days ago.
5 stars 8.50 score 152 scripts 1 dependents
posit-dev
shinylive:Run 'shiny' Applications in the Browser
Exporting 'shiny' applications with 'shinylive' allows you to run them entirely in a web browser, without the need for a separate R server. The traditional way of deploying 'shiny' applications involves in a separate server and client: the server runs R and 'shiny', and clients connect via the web browser. When an application is deployed with 'shinylive', R and 'shiny' run in the web browser (via 'webR'): the browser is effectively both the client and server for the application. This allows for your 'shiny' application exported by 'shinylive' to be hosted by a static web server.
Maintained by Barret Schloerke. Last updated 5 months ago.
187 stars 8.35 score 194 scripts
safetygraphics
safetyGraphics:Interactive Graphics for Monitoring Clinical Trial Safety
A framework for evaluation of clinical trial safety. Users can interactively explore their data using the included 'Shiny' application.
Maintained by Jeremy Wildfire. Last updated 2 years ago.
99 stars 8.19 score 111 scripts
pakillo
grateful:Facilitate Citation of R Packages
Facilitates the citation of R packages used in analysis projects. Scans project for packages used, gets their citations, and produces a document with citations in the preferred bibliography format, ready to be pasted into reports or manuscripts. Alternatively, 'grateful' can be used directly within an 'R Markdown' or 'Quarto' document.
Maintained by Francisco Rodriguez-Sanchez. Last updated 15 days ago.
citation-generatorsoftware-citation
229 stars 8.04 score 269 scriptspik-piam
magpie4:MAgPIE outputs R package for MAgPIE version 4.x
Common output routines for extracting results from the MAgPIE framework (versions 4.x).
Maintained by Benjamin Leon Bodirsky. Last updated 16 hours ago.
2 stars 7.89 score 254 scripts 9 dependents
bioc
LACE:Longitudinal Analysis of Cancer Evolution (LACE)
LACE is an algorithmic framework that processes single-cell somatic mutation profiles from cancer samples collected at different time points and in distinct experimental settings, to produce longitudinal models of cancer evolution. The approach solves a Boolean Matrix Factorization problem with phylogenetic constraints, by maximizing a weighed likelihood function computed on multiple time points.
Maintained by Davide Maspero. Last updated 14 days ago.
biomedicalinformaticssinglecellsomaticmutation
15 stars 7.75 score 3 scripts
carpentries
sandpaper:Create and Curate Carpentries Lessons
We provide tools to build a Carpentries-themed lesson repository into an accessible standalone static website. These include local tools and those designed to be used in a continuous integration context so that all the lesson author needs to focus on is writing the content of the actual lesson.
Maintained by Robert Davey. Last updated 2 months ago.
carpentriescarpentries-infrastructurecarpentries-workbenchlesson-templatelessonsmarkdownstatic-site-generator
44 stars 7.68 score 8 scripts
neurogenomics
rworkflows:Test, Document, Containerise, and Deploy R Packages
Reproducibility is essential to the progress of research, yet achieving it remains elusive even in computational fields. Continuous Integration (CI) platforms offer a powerful way to launch automated workflows to check and document code, but often require considerable time, effort, and technical expertise to setup. We therefore developed the rworkflows suite to make robust CI workflows easy and freely accessible to all R package developers. rworkflows consists of 1) a CRAN/Bioconductor-compatible R package template, 2) an R package to quickly implement a standardised workflow, and 3) a centrally maintained GitHub Action.
Maintained by Brian Schilder. Last updated 2 months ago.
softwareworkflowmanagementbioconductorcontainerscontinuous-integrationdockerdockerhubgithub-actionsreproducibilityworkflows
79 stars 7.60 score 6 scripts
dfe-analytical-services
dfeR:Common Department for Education Analysis Tasks
Preferred methods for common analytical tasks that are undertaken across the Department, including number formatting, project templates and curated reference data.
Maintained by Cam Race. Last updated 1 months ago.
12 stars 6.89 score 8 scriptspik-piam
edgeTransport:Prepare EDGE Transport Data for the REMIND model
EDGE-T is a fork of the GCAM transport module https://jgcri.github.io/gcam-doc/energy.html#transportation with a high level of detail in its representation of technological and modal options. It is a partial equilibrium model with a nested multinomial logit structure and relies on the modified logit formulation. Most of the sources are not publicly available. PIK-internal users can find the sources in the distributed file system in the folder `/p/projects/rd3mod/inputdata/sources/EDGE-Transport-Standalone`.
Maintained by Johanna Hoppe. Last updated 3 hours ago.
5 stars 6.84 score 16 scripts 2 dependents
frbcesab
rcompendium:Create a Package or Research Compendium Structure
Makes easier the creation of R package or research compendium (i.e. a predefined files/folders structure) so that users can focus on the code/analysis instead of wasting time organizing files. A full ready-to-work structure is set up with some additional features: version control, remote repository creation, CI/CD configuration (check package integrity under several OS, test code with 'testthat', and build and deploy website using 'pkgdown'). This package heavily relies on the R packages 'devtools' and 'usethis' and follows recommendations made by Wickham H. (2015) <ISBN:9781491910597> and Marwick B. et al. (2018) <doi:10.7287/peerj.preprints.3192v2>.
Maintained by Nicolas Casajus. Last updated 2 months ago.
reproducible-researchresearch-compendium
40 stars 6.72 score 22 scriptspik-piam
mrcommons:MadRat commons Input Data Library
Provides useful functions and a common structure to all the input data required to run models like MAgPIE and REMIND of model input data.
Maintained by Jan Philipp Dietrich. Last updated 14 hours ago.
1 stars 6.70 score 16 scripts 15 dependentsppbds
r4ds.tutorials:Tutorials for "R for Data Science"
When assigned "R for Data Science" (Wickham, รetinkaya-Rundel, and Grolemund (2023, ISBN: 1492097402)), students should read the book and type in all the associated R commands themselves. Sadly, that never happens. These tutorials allow students to demonstrate (and their instructors to be sure) that all work has been completed. See Kane (2023) <https://ppbds.github.io/tutorial.helpers/articles/instructions.html> from the 'tutorial.helpers' package for a background discussion.
Maintained by David Kane. Last updated 1 months ago.
8 stars 6.55 score 11 scripts
gisma
uavRmp:UAV Mission Planner
The Unmanned Aerial Vehicle Mission Planner provides an easy to use work flow for planning autonomous obstacle avoiding surveys of ready to fly unmanned aerial vehicles to retrieve aerial or spot related data. It creates either intermediate flight control files for the DJI-Litchi supported series or ready to upload control files for the pixhawk-based flight controller as used in the 3DR-Solo or Yuneec series. Additionally it contains some useful tools for digitizing and data manipulation.
Maintained by Chris Reudenbach. Last updated 10 months ago.
cultural-heritagedjidroneflight-planningforest-mappinglitchilow-budget-uavmission-planningphotogrammetrypixhawkpixhawk-controllerqgroundcontrol2litchisolosurveyterrain-followingterrain-mappinguavsyuneec
25 stars 6.48 score 6 scriptspik-piam
mrwater:madrat based MAgPIE water Input Data Library
Provides functions for MAgPIE cellular input data generation and stand-alone water calculations.
Maintained by Felicitas Beier. Last updated 5 months ago.
6.45 score 4 scripts 3 dependentspik-piam
mrdrivers:Create GDP and Population Scenarios
Create GDP and population scenarios This package constructs the GDP and population scenarios used as drivers in both the REMIND and MAgPIE models.
Maintained by Johannes Koch. Last updated 7 days ago.
6.41 score 5 scripts 19 dependents
gesistsa
rang:Reconstructing Reproducible R Computational Environments
Resolve the dependency graph of R packages at a specific time point based on the information from various 'R-hub' web services <https://blog.r-hub.io/>. The dependency graph can then be used to reconstruct the R computational environment with 'Rocker' <https://rocker-project.org>.
Maintained by Chung-hong Chan. Last updated 2 months ago.
reproducibilityreproducible-research
80 stars 6.32 score 13 scriptspik-piam
mrremind:MadRat REMIND Input Data Package
The mrremind packages contains data preprocessing for the REMIND model.
Maintained by Lavinia Baumstark. Last updated 14 hours ago.
4 stars 6.25 score 15 scripts 1 dependents
ddsjoberg
starter:Starter Kit for New Projects
Get started with new projects by dropping a skeleton of a new project into a new or existing directory, initialise git repositories, and create reproducible environments with the 'renv' package. The package allows for dynamically named files, folders, file content, as well as the functionality to drop individual template files into existing projects.
Maintained by Daniel D. Sjoberg. Last updated 5 months ago.
27 stars 6.18 score 28 scriptspik-piam
luscale:PIK Landuse Group Data Scaling Tools
A collection of tools which allow to aggregate and disaggregate data in various ways.
Maintained by Jan Philipp Dietrich. Last updated 5 months ago.
2 stars 6.14 score 58 scripts 24 dependentspik-piam
luplot:Landuse Plot Library
Some useful functions to plot data such as a map plot function for MAgPIE objects.
Maintained by Benjamin Bodirsky. Last updated 2 months ago.
6.09 score 124 scripts 11 dependents
sammo3182
drhur:Learning R with Dr. Hu
Tutarials of R learning easily and happily.
Maintained by Yue Hu. Last updated 1 years ago.
18 stars 6.06 score 16 scripts
ankane
jetpack:A Friendly Package Manager
Manage project dependencies from your DESCRIPTION file. Create a reproducible virtual environment with minimal additional files in your project. Provides tools to add, remove, and update dependencies as well as install existing dependencies with a single function.
Maintained by Andrew Kane. Last updated 11 days ago.
242 stars 5.96 score 19 scripts
tscnlab
LightLogR:Process Data from Wearable Light Loggers and Optical Radiation Dosimeters
Import, processing, validation, and visualization of personal light exposure measurement data from wearable devices. The package implements features such as the import of data and metadata files, conversion of common file formats, validation of light logging data, verification of crucial metadata, calculation of common parameters, and semi-automated analysis and visualization.
Maintained by Johannes Zauner. Last updated 1 months ago.
dosimetrylighttime-series-analysiswearable-deviceswearable-sensors
12 stars 5.88 score 28 scriptsappsilon
shiny.benchmark:Benchmark the Performance of 'shiny' Applications
Compare performance between different versions of a 'shiny' application based on 'git' references.
Maintained by Douglas Azevedo. Last updated 11 months ago.
performance-testingrhinoverseshiny
31 stars 5.79 score 6 scripts
profandyfield
adventr:Interactive R Tutorials to Accompany Field (2016), "An Adventure in Statistics"
Interactive 'R' tutorials written using 'learnr' for Field (2016), "An Adventure in Statistics", <ISBN:9781446210451>. Topics include general workflow in 'R' and 'Rstudio', the 'R' environment and 'tidyverse', summarizing data, model fitting, central tendency, visualising data using 'ggplot2', inferential statistics and robust estimation, hypothesis testing, the general linear model, comparing means, repeated measures designs, factorial designs, multilevel models, growth models, and generalized linear models (logistic regression).
Maintained by Andy Field. Last updated 4 years ago.
36 stars 5.79 score 34 scriptsbioc
scRNAseqApp:A single-cell RNAseq Shiny app-package
The scRNAseqApp is a Shiny app package designed for interactive visualization of single-cell data. It is an enhanced version derived from the ShinyCell, repackaged to accommodate multiple datasets. The app enables users to visualize data containing various types of information simultaneously, facilitating comprehensive analysis. Additionally, it includes a user management system to regulate database accessibility for different users.
Maintained by Jianhong Ou. Last updated 15 days ago.
visualizationsinglecellrnaseqinteractive-visualizationsmultiple-usersshiny-appssingle-cell-rna-seq
4 stars 5.76 score 3 scriptspik-piam
mrland:MadRaT land data package
The package provides land related data via the madrat framework.
Maintained by Jan Philipp Dietrich. Last updated 9 days ago.
5.59 score 3 scripts 4 dependents
mlverse
pysparklyr:Provides a 'PySpark' Back-End for the 'sparklyr' Package
It enables 'sparklyr' to integrate with 'Spark Connect', and 'Databricks Connect' by providing a wrapper over the 'PySpark' 'python' library.
Maintained by Edgar Ruiz. Last updated 4 days ago.
databrickspysparksparkspark-connect
15 stars 5.58 score 13 scripts
signaturescience
pracpac:Practical 'R' Packaging in 'Docker'
Streamline the creation of 'Docker' images with 'R' packages and dependencies embedded. The 'pracpac' package provides a 'usethis'-like interface to creating Dockerfiles with dependencies managed by 'renv'. The 'pracpac' functionality is described in Nagraj and Turner (2023) <doi:10.48550/arXiv.2303.07876>.
Maintained by VP Nagraj. Last updated 2 years ago.
34 stars 5.53 score 5 scriptspik-piam
mrindustry:input data generation for the REMIND industry module
The mrindustry packages contains data preprocessing for the REMIND model.
Maintained by Falk Benke. Last updated 8 days ago.
5.43 score 2 dependents
thinkr-open
lozen:Management tools for missions
Management tools for missions (internal and external). Includes weekly, GL projects, etc.
Maintained by Sรฉbastien Rochette. Last updated 12 months ago.
7 stars 5.42 score 14 scriptsbioc
bettr:A Better Way To Explore What Is Best
bettr provides a set of interactive visualization methods to explore the results of a benchmarking study, where typically more than a single performance measures are computed. The user can weight the performance measures according to their preferences. Performance measures can also be grouped and aggregated according to additional annotations.
Maintained by Charlotte Soneson. Last updated 5 months ago.
3 stars 5.26 score 3 scriptspik-piam
modelstats:Run Analysis Tools
A collection of tools to analyze model runs.
Maintained by Anastasis Giannousakis. Last updated 12 days ago.
1 stars 5.19 score 2 scriptspik-piam
mrmagpie:madrat based MAgPIE Input Data Library
Provides functions for MAgPIE country and cellular input data generation.
Maintained by Kristine Karstens. Last updated 10 days ago.
5.12 score 2 dependentspik-piam
mrlandcore:One-line description of this awesome package
One-paragraph description of this awesome package.
Maintained by Felicitas Beier. Last updated 2 months ago.
1 stars 5.11 score 16 dependents
framverse
framrsquared:FRAM Database Interface
A convenient tool for interfacing with FRAM access databases in R environments.
Maintained by Ty Garber. Last updated 3 months ago.
6 stars 5.06 score 9 scriptspik-piam
remulator:R emulator
A collection of R tools for fitting model results.
Maintained by David Klein. Last updated 1 years ago.
5.00 score 11 scripts 6 dependentspik-piam
mstools:Tool functions that can be used by several madrat-dependent or magpie4 output functions
Tool functions that can be used by several madrat-dependent or magpie4 output functions.
Maintained by Benjamin Leon Bodirsky. Last updated 4 months ago.
4.97 score 2 scripts 26 dependentspik-piam
mrtransport:Input data generation for the EDGE-Transport model
The mrtransport package contains data preprocessing for the EDGE-Transport model.
Maintained by Johanna Hoppe. Last updated 10 hours ago.
4.86 score 3 dependentspik-piam
mrvalidation:madrat data preparation for validation purposes
Package contains routines to prepare data for validation exercises.
Maintained by Benjamin Leon Bodirsky. Last updated 5 days ago.
4.81 score 9 scripts 1 dependents
analythium
deps:Dependency Management with 'roxygen'-Style Comments
Manage your source code dependencies by decorating your existing R code with special, 'roxygen'-style comments.
Maintained by Peter Solymos. Last updated 2 months ago.
dependenciespackagesreproducibility
31 stars 4.79 score 5 scriptspik-piam
mrfaocore:madrat-based package providing core FAO-related preprocessing functions
This madrat-based package provides core FAO-related preprocessing functions.
Maintained by David Chen. Last updated 16 days ago.
4.79 score 17 dependents
dmolitor
tugboat:Build a Docker Image from a Directory or Project
Simple utilities to generate a Dockerfile from a directory or project, build the corresponding Docker image, and push the image to DockerHub.
Maintained by Daniel Molitor. Last updated 3 months ago.
21 stars 4.72 score 4 scriptsddsjoberg
updater:Utilities for Updating R
When updating major or minor R versions all packages should be re-installed. The utilities in this package assist in getting a user up-and-running again by installing all previously installed R packages. The package uses 'renv' to install; immediately replenishing your 'renv' package cache.
Maintained by Daniel D. Sjoberg. Last updated 2 years ago.
9 stars 4.71 score 115 scriptspik-piam
mrfactors:MADRaT based package on factor inputs
This package provides functions for MAgPIE input data on factor inputs to agricultural production (with a focus on capital and labor).
Maintained by Debbora Leip. Last updated 2 days ago.
4.67 score 1 scripts 5 dependentspik-piam
limes:The liMES R package
Contains the LIMES-specific routines for data and model output manipulation.
Maintained by Sebastian Osorio. Last updated 11 days ago.
1 stars 4.63 score 5 scriptspik-piam
reporttransport:Reporting package for edgeTransport
This package contains edgeTransport-specific routines to report model results. The main functionality is to generate transport reporting variables in MIF format from a given edgeTransport model run folder or REMIND input data.
Maintained by Johanna Hoppe. Last updated 2 months ago.
4.60 score 9 scripts 3 dependents
rjknell
Biostatistics:Statistics Tutorials for Biologists
Tutorials for statistics, aimed at biological scientists. Subjects range from basic descriptive statistics through to complex linear modelling. The tutorials include text, videos, interactive coding exercises and multiple choice quizzes. The package also includes 19 datasets which are used in the tutorials.
Maintained by Rob Knell. Last updated 3 years ago.
4.54 score 5 scriptsthinkr-open
tutor:Deploy shiny_prerendered Rmds
Deploy Rmd using shiny_prerendered.
Maintained by vincent guyader. Last updated 10 months ago.
4 stars 4.51 score 102 scripts
learnitr
learnitdown:R Markdown, Bookdown and Learnr Additions for Learning Material
Extension to R Markdown, Bookdown and Learnr for building better learning and e-learning material: H5P integration, course-contextual divs, differed loading of Shiny and learnr applications, and much more ...
Maintained by Philippe Grosjean. Last updated 7 months ago.
bookdownlearning-resourcesr-markdownteaching-materials
13 stars 4.49 score 16 scriptsbioc
BiocBook:Write, containerize, publish and version Quarto books with Bioconductor
A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).
Maintained by Jacques Serizay. Last updated 5 months ago.
infrastructurereportwritingsoftware
3 stars 4.48 score 4 scripts
certara
Certara.R:Easily Install Pharmacometric Packages and Shiny Applications Developed by Certara
A convenient set of wrapper functions to install pharmacometric packages and Shiny applications developed by Certara PMX and Integrated Drug Development (iDD). The functions ensure the successful installation of packages from non-standard repositories.
Maintained by James Craig. Last updated 5 months ago.
14 stars 4.45 score 2 scriptsdmolitor
jetty:Execute R in a 'Docker' Context
The goal of 'jetty' is to execute R functions and code snippets in an isolated R subprocess within a 'Docker' container and return the evaluated results to the local R session. 'jetty' can install necessary packages at runtime and seamlessly propagates errors and outputs from the 'Docker' subprocess back to the main session. 'jetty' is primarily designed for sandboxed testing and quick execution of example code.
Maintained by Daniel Molitor. Last updated 2 months ago.
7 stars 4.38 score 23 scripts
danymukesha
genetic.algo.optimizeR:Genetic Algorithm Optimization
Genetic algorithm are a class of optimization algorithms inspired by the process of natural selection and genetics. This package is for learning purposes and allows users to optimize various functions or parameters by mimicking biological evolution processes such as selection, crossover, and mutation. Ideal for tasks like machine learning parameter tuning, mathematical function optimization, and solving an optimization problem that involves finding the best solution in a discrete space.
Maintained by Dany Mukesha. Last updated 6 months ago.
4.30 score 10 scripts
conig
revise:Dynamic Revision Letters for 'Rmarkdown' Manuscripts
Extracts tagged text from markdown manuscripts for inclusion in dynamically generated revision letters. Provides an R markdown template based on papaja::revision_letter_pdf() with comment cross-referencing, a system for managing multiple sections of extracted text, and a way to automatically determine the page number of quoted sections from PDF manuscripts.
Maintained by James Conigrave. Last updated 25 days ago.
3 stars 4.26 score
milesmcbain
capsule:A streamlined inversion of `renv`
A `capsule` is a stable local package library that you consciously choose to execute code within. Think of it as representing 'production', while your normal interactive R session represents 'development'.
Maintained by Miles McBain. Last updated 25 days ago.
156 stars 4.19 score 5 scripts
gsk-biostatistics
tfrmtbuilder:'shiny' App Companion to the 'tfrmt' Package
Provides an interactive interface to the 'tfrmt' package. Users can import, modify, and export tables and templates with little to no code.
Maintained by Becca Krouse. Last updated 7 months ago.
5 stars 4.18 score 9 scripts
vincentarelbundock
softbib:Software Bibliographies for R Projects
Detect libraries used in a project and automatically create software bibliographies in 'PDF', 'Word', 'Rmarkdown', and 'BibTeX' formats.
Maintained by Vincent Arel-Bundock. Last updated 4 months ago.
30 stars 4.18 score 6 scriptspik-piam
mrsoil:MadRat Soil Organic Carbon Budget Library
This packages provides functions for soil organic carbon budget for mineral soils using the steady-state method (Tier 2) of the 2019 Refinement to the 2006 IPP Guidelines for National Greenhouse Gas Inventories.
Maintained by Kristine Karstens. Last updated 6 months ago.
3 stars 4.03 score 3 dependents
albertoalmuinha
shinyrecipes:Gadget to Use the Data Preprocessing 'recipes' Package Interactively
This gadget allows you to use the 'recipes' package belonging to 'tidymodels' to carry out the data preprocessing tasks in an interactive way. Build your 'recipe' by dragging the variables, visually analyze your data to decide which steps to use, add those steps and pre-process your data.
Maintained by Alberto Almuiรฑa. Last updated 5 years ago.
19 stars 3.98 score 5 scripts
paulgovan
WeibullR.learnr:An Interactive Introduction to Life Data Analysis
An interactive introduction to Life Data Analysis that depends on 'WeibullR' by David Silkworth and Jurgen Symynck (2022) <https://CRAN.R-project.org/package=WeibullR>, a R package for Weibull Analysis, and 'learnr' by Garrick Aden-Buie et al. (2023) <https://CRAN.R-project.org/package=learnr>, a framework for building interactive learning modules in R.
Maintained by Paul Govan. Last updated 23 days ago.
life-data-analysisreliabilitytutorialweibull-analysis
3.78 score 3 scripts
cynkra
cynkrathis:Simplify Project Scaffolding and Common 'renv' Related Tasks
Opionionated {renv} helper package by cynkra GmbH.
Maintained by Patrick Schratz. Last updated 4 months ago.
5 stars 3.78 score 1 scriptspik-piam
mredgebuildings:Prepare data to be used by the EDGE-Buildings model
Prepare data to be used by the EDGE-Buildings model.
Maintained by Robin Hasse. Last updated 15 days ago.
3.72 score
sigbertklinke
smvgraph:Visualization and Clustering of Data in a Shiny App
Various visualisations of univariate and multivariate graphs (e.g. mosaic diagram, scatterplot matrix, Andrews curves, parallel coordinate diagram, radar diagram and Chernoff plots) as well as clustering methods (e.g. k-means, agglomerative, EM clustering and DBSCAN) are implemented as a Shiny app. The app allows interactive changes, e.g. of the order of variables. It is intended for use in teaching.
Maintained by Sigbert Klinke. Last updated 2 years ago.
3.70 scorepik-piam
mrfable:FABLE project data
Tool for easy downloading, cleaning, and sorting foodcrop data for India taken from here: https://eands.dacnet.nic.in/APY_96_To_07.htm .
Maintained by Anastasis Giannousakis. Last updated 1 years ago.
2 stars 3.60 score 3 scriptspik-piam
mrfeed:MadRat feed data package
Provides feed related data.
Maintained by Isabelle Weindl. Last updated 12 months ago.
3.56 score
larmarange
guideR:Miscellaneous Statistical Functions Used in 'guide-R'
Companion package for the manual 'guide-R : Guide pour lโanalyse de donnรฉes dโenquรชtes avec R' available at <https://larmarange.github.io/guide-R/>. 'guideR' implements miscellaneous functions introduced in 'guide-R' to facilitate statistical analysis and manipulation of survey data.
Maintained by Joseph Larmarange. Last updated 18 hours ago.
1 stars 3.54 score 2 scriptspik-piam
reportbrick:Reporting package for BRICK
This package contains BRICK-specific routines to report model results. The main functionality is to generate a mif-file from a given BRICK model run folder.
Maintained by Robin Hasse. Last updated 1 months ago.
3.48 score 2 dependentspik-piam
m4fsdp:MAgPIE outputs R package for MAgPIE version 4.x to create outputs for FSDP project
Output routines for extracting results from the MAgPIE framework (versions 4.x) for the FSDP project.
Maintained by Benjamin Leon Bodirsky. Last updated 4 months ago.
3.43 score 8 scriptsppbds
positron.tutorials:Tutorials for Learning 'Positron' and Related Tools
Collection of tutorials for working with 'Positron'. Covers scripts, 'Quarto' documents, 'Git', 'GitHub', and 'Quarto' websites. Makes extensive use of the tools in the 'tutorial.helpers' package.
Maintained by David Kane. Last updated 4 days ago.
3.40 scorepik-piam
piamenv:Package environment support for PIAM
Enables easier management of package environments, based on renv and conda.
Maintained by Pascal Sauer. Last updated 3 days ago.
3.32 score
lcbc-uio
lcbcr:LCBC brand package
Functions and setups with brand styling and lab general setups.
Maintained by Athanasia Mo Mowinckel. Last updated 3 years ago.
3.00 score 2 scripts
roaldarbol
rpix:R package to manage dependencies with pixi
More about what it does (maybe more than one line) Use four spaces when indenting paragraphs within the Description.
Maintained by Mikkel Roald-Arbรธl. Last updated 8 months ago.
6 stars 2.95 score 3 scripts
aleksanderbl29
aleksandeR:Aleksander Bang-Larsen's personal convenience functions
This package supplies all the convenience functions that I have written to make my life easier.
Maintained by Aleksander Bang-Larsen. Last updated 18 days ago.
1 stars 2.93 score 6 scripts
ugranziol
appRiori:Code and Obtain Customized Planned Comparisons with 'appRiori'
With 'appRiori' <doi:10.1177/25152459241293110>, users upload the research variables and the app guides them to the best set of comparisons fitting the hypotheses, for both main and interaction effects. Through a graphical explanation and empirical examples on reproducible data, it is shown that it is possible to understand both the logic behind the planned comparisons and the way to interpret them when a model is tested.
Maintained by Umberto Granziol. Last updated 30 days ago.
2 stars 2.90 score 7 scripts
openjusticeok
ojoutils:A Collection of Nifty Functions and Objects for OJO Analysts
We find ourselves repeating the same simple tasks or running a series of R commands over and over again. No more!
Maintained by Brancen Gregory. Last updated 2 months ago.
2.90 score 2 scripts
joelnitta
joholearnr:Tutorials for Joho-shori-enshu Class at Chiba University
Provides {learnr} tutorials as homework assignments for the Joho-shori-enshu Class at Chiba University, Japan.
Maintained by Joel H. Nitta. Last updated 4 months ago.
2.74 score 9 scriptspik-piam
piktests:Run PIK Integration Tests
This package includes integration tests for selected models and packages related to those models.
Maintained by Pascal Fรผhrlich. Last updated 2 years ago.
2.70 score
dchiu911
rsf:Report of Statistical Findings in 'bookdown'
A report of statistical findings (RSF) project template is generated using a 'bookdown' format. 'YAML' fields can be further customized. Additional helper functions provide extra features to the RSF.
Maintained by Derek Chiu. Last updated 3 years ago.
2.70 score
jumpingrivers
audit.connect:Posit Connect Health Check
Posit Connect Health Check. Deploys various content types to assess whether Connect is functioning correctly.
Maintained by Jumping Rivers. Last updated 1 months ago.
2.70 score 1 scriptspik-piam
edgeTrpLib:Helper functions for EDGE transport calculations
This package is highly specialized and created solely to not duplicate helper functions.
Maintained by Alois Dirnaichner. Last updated 3 years ago.
2.54 score 5 scriptspik-piam
regressionworlddata:Regression analysis based on global datasets
Model estimates parameters of model functions.
Maintained by Benjamin Leon Bodirsky. Last updated 10 months ago.
2.48 score
drmowinckels
tidyquintro:Quick Intro to Tidyverse
A 4 hour workshop with quick introduction to tidyverse.
Maintained by Athanasia Mo Mowinckel. Last updated 2 years ago.
3 stars 2.38 score 16 scriptspik-piam
mrvalidnitrogen:madrat data preparation for validation purposes of nitrogen budgets
Package contains routines to prepare data for validation exercises.
Maintained by Benjamin Leon Bodirsky. Last updated 1 years ago.
2.18 score 1 scriptspik-piam
mrtutorial:Tutorial Package For Madrat Package Library
Example package of mr- world libraries, in conjunction with MAgPIE MADRat tutorial. For more information please see: https://github.com/magpiemodel/tutorials/tree/master/madrat .
Maintained by David Meng-Chuen Chen. Last updated 12 months ago.
2.18 score 2 scripts
certara-jcraig
Certara.VPCResults:Generate Visual Predictive Checks (VPC) Using 'shiny'
Utilize the 'shiny' interface to parameterize a Visual Predictive Check (VPC), including selecting from different binning or binless methods and performing stratification, censoring, and prediction correction. Generate the underlying 'tidyvpc' and 'ggplot2' code directly from the user interface and download R or Rmd scripts to reproduce the VPCs in R.
Maintained by James Craig. Last updated 4 months ago.
2.11 score 13 scripts
rdinnager
sdmpack:FIU SDM Course Package
Course material for FIU course on SDM
Maintained by Russell Dinnage. Last updated 1 years ago.
2.08 score 24 scriptspik-piam
mrfish:madrat data preparation for data connected to fish
Package contains routines to prepare data for validation exercises.
Maintained by Benjamin Leon Bodirsky. Last updated 1 years ago.
2.00 score 1 scriptspik-piam
mrwaste:Analysis and Projection of Municipal Solid Waste
Reads in waste data from What a Waste 2.0 and uses brms package to create future regressions based on GDP.
Maintained by David Meng-Chuen Chen. Last updated 10 months ago.
2.00 scorepik-piam
mrwaterplots:plotting library for mrwater outputs
The mrwaterplots package plots outputs from mrwater library.
Maintained by Felicitas Beier. Last updated 23 days ago.
2.00 score
matt-dray
tidyquiz:A Tidyverse Quiz
The package contains a multiple-choice quiz built with {learnr} to test your knowledge of the functions of the tidyverse.
Maintained by Matt Dray. Last updated 4 years ago.
2 stars 2.00 score 7 scripts
certara-jcraig
Certara.ModelResults:Generate Diagnostics for Pharmacometric Models Using 'shiny'
Utilize the 'shiny' interface to generate Goodness of Fit (GOF) plots and tables for Non-Linear Mixed Effects (NLME / NONMEM) pharmacometric models. From the interface, users can customize model diagnostics and generate the underlying R code to reproduce the diagnostic plots and tables outside of the 'shiny' session. Model diagnostics can be included in a 'rmarkdown' document and rendered to desired output format.
Maintained by James Craig. Last updated 26 days ago.
1.70 score
inqs909
csustats:CSU R Tutorials
This package contains learnr tutorials used to teach R for STAT 170 students.
Maintained by Isaac Quintanilla Salinas. Last updated 2 years ago.
1.70 score
emptyfield-ds
rrr.workshop:Install Materials for Reproducible Research in R
Install learning materials for Reproducible Research in R.
Maintained by Malcolm Barrett. Last updated 4 years ago.
1.70 score 1 scripts
yangfengstat
r02pro:R Programming: Zero to Pro
This is a companion package of the book "R Programming: Zero to Pro" <https://r02pro.github.io/>. It contains the datasets used in the book and provides interactive exercises corresponding to the book. It covers a wide range of topics including visualization, data transformation, tidying data, data input and output.
Maintained by Yang Feng. Last updated 2 years ago.
1.70 score 50 scripts
terminological
pkgtools:Code generation and linting functions for R packages
Perform common tasks and fix common errors in project and package development. This is a developer tool rather than an end user package.
Maintained by Robert Challen. Last updated 1 years ago.
1 stars 1.70 scorecertara-jcraig
Certara.DarwinReporter:Data Visualization Utilities for 'pyDarwin' Machine Learning Pharmacometric Model Development
Utilize the 'shiny' interface for visualizing results from a 'pyDarwin' (<https://certara.github.io/pyDarwin/>) machine learning pharmacometric model search. It generates Goodness-of-Fit plots and summary tables for selected models, allowing users to customize diagnostic outputs within the interface. The underlying R code for generating plots and tables can be extracted for use outside the interactive session. Model diagnostics can also be incorporated into an R Markdown document and rendered in various output formats.
Maintained by James Craig. Last updated 21 days ago.
1.70 scorepik-piam
mrdieter:MadRat DIETER Input Data Package
The mrdieter package contains data preprocessing for the DIETER model.
Maintained by Falk Benke. Last updated 3 years ago.
1.70 score
robitalec
CSEE.reproducible.workflows.workshop:Workshop for CSEE 2023 On Reproducible Workflows In R
Developing a reproducible workflow in R using functions, targets and renv.
Maintained by Alec L. Robitaille. Last updated 2 years ago.
conflictedfunctionsprojectsrenvreproducibilitytargetstargets-pipeline
1 stars 1.70 scoreemptyfield-ds
shunyata:Deploy Empty Field Teaching Material
This package helps set up new teaching material and deploy courses based on the Empty Field teaching workflow.
Maintained by Malcolm Barrett. Last updated 1 years ago.
1 stars 1.70 score 2 scripts
sai-ch
Rsconctdply:Deploys Multiple 'Shiny' Apps using Configuration File
Provides a tool for mass deployment of shiny apps to 'RStudio Connect' or 'Shiny Server'. Multiple user accounts and servers can be configured for deployment.
Maintained by Sai Chimata. Last updated 6 years ago.
1.70 score 1 scripts
daphnaharel
sur:Companion to "Statistics Using R: An Integrative Approach"
Access to the datasets and many of the functions used in "Statistics Using R: An Integrative Approach". These datasets include a subset of the National Education Longitudinal Study, the Framingham Heart Study, as well as several simulated datasets used in the examples throughout the textbook. The functions included in the package reproduce some of the functionality of 'Stata' that is not directly available in 'R'. The package also contains a tutorial on basic data frame management, including how to handle missing data.
Maintained by Daphna Harel. Last updated 5 years ago.
1.26 score 18 scripts