Showing 27 of total 27 results (show query)
jmsigner
amt:Animal Movement Tools
Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate home ranges, track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses, and simulation of space-use from fitted step-selection functions.
Maintained by Johannes Signer. Last updated 5 months ago.
41 stars 10.54 score 418 scripts
dataoneorg
dataone:R Interface to the DataONE REST API
Provides read and write access to data and metadata from the DataONE network <https://www.dataone.org> of data repositories. Each DataONE repository implements a consistent repository application programming interface. Users call methods in R to access these remote repository functions, such as methods to query the metadata catalog, get access to metadata for particular data packages, and read the data objects from the data repository. Users can also insert and update data objects on repositories that support these methods.
Maintained by Matthew B. Jones. Last updated 3 years ago.
36 stars 9.93 score 472 scripts 3 dependents
rstudio
shinytest:Test Shiny Apps
Please see the shinytest to shinytest2 migration guide at <https://rstudio.github.io/shinytest2/articles/z-migration.html>.
Maintained by Winston Chang. Last updated 10 months ago.
225 stars 9.02 score 352 scripts
cynkra
fledge:Smoother Change Tracking and Versioning for R Packages
Streamlines the process of updating changelogs (NEWS.md) and versioning R packages developed in git repositories.
Maintained by Kirill Müller. Last updated 3 months ago.
188 stars 8.73 score 10 scripts
nceas
metajam:Easily Download Data and Metadata from 'DataONE'
A set of tools to foster the development of reproducible analytical workflow by simplifying the download of data and metadata from 'DataONE' (<https://www.dataone.org>) and easily importing this information into R.
Maintained by Julien Brun. Last updated 8 months ago.
datadata-analysismetadatarepositories
16 stars 8.13 score 75 scripts
thinkr-open
togglr:'Toggl.com' Api for 'Rstudio'
Use the <https://toggl.com> time tracker api through R.
Maintained by Vincent Guyader. Last updated 1 years ago.
49 stars 6.81 score 33 scripts
miracum
DQAstats:Core Functions for Data Quality Assessment
Perform data quality assessment ('DQA') of electronic health records ('EHR'). Publication: Kapsner et al. (2021) <doi:10.1055/s-0041-1733847>.
Maintained by Lorenz A. Kapsner. Last updated 2 days ago.
9 stars 6.58 score 4 scripts 1 dependents
gesistsa
rang:Reconstructing Reproducible R Computational Environments
Resolve the dependency graph of R packages at a specific time point based on the information from various 'R-hub' web services <https://blog.r-hub.io/>. The dependency graph can then be used to reconstruct the R computational environment with 'Rocker' <https://rocker-project.org>.
Maintained by Chung-hong Chan. Last updated 2 months ago.
reproducibilityreproducible-research
80 stars 6.32 score 13 scripts
phuse-org
sendigR:Enable Cross-Study Analysis of 'CDISC' 'SEND' Datasets
A system enables cross study Analysis by extracting and filtering study data for control animals from 'CDISC' 'SEND' Study Repository. These data types are supported: Body Weights, Laboratory test results and Microscopic findings. These database types are supported: 'SQLite' and 'Oracle'.
Maintained by Wenxian Wang. Last updated 27 days ago.
12 stars 6.28 score 6 scripts
nataliepatten
gatoRs:Geographic and Taxonomic Occurrence R-Based Scrubbing
Streamlines downloading and cleaning biodiversity data from Integrated Digitized Biocollections (iDigBio) and the Global Biodiversity Information Facility (GBIF).
Maintained by Natalie N. Patten. Last updated 11 months ago.
11 stars 6.16 score 66 scripts
rmendels
rerddapXtracto:Extracts Environmental Data from 'ERDDAP™' Web Services
Contains three functions that access environmental data from any 'ERDDAP™' data web service. The rxtracto() function extracts data along a trajectory for a given "radius" around the point. The rxtracto_3D() function extracts data in a box. The rxtractogon() function extracts data in a polygon. All of those three function use the 'rerddap' package to extract the data, and should work with any 'ERDDAP™' server. There are also two functions, plotBBox() and plotTrack() that use the 'plotdap' package to simplify the creation of maps of the data.
Maintained by Roy Mendelssohn. Last updated 13 days ago.
14 stars 5.97 score 44 scripts
ropensci
dataaimsr:AIMS Data Platform API Client
AIMS Data Platform API Client which provides easy access to AIMS Data Platform scientific data and information.
Maintained by Diego R. Barneche. Last updated 2 years ago.
aimsaustraliadatamarinemonitoringsstweather
4 stars 5.11 score 54 scriptsmiracum
DIZutils:Utilities for 'DIZ' R Package Development
Utility functions used for the R package development infrastructure inside the data integration centers ('DIZ') to standardize and facilitate repetitive tasks such as setting up a database connection or issuing notification messages and to avoid redundancy.
Maintained by Jonathan M. Mang. Last updated 4 months ago.
3 stars 5.03 score 5 scripts 2 dependentsmiracum
DIZtools:Lightweight Utilities for 'DIZ' R Package Development
Lightweight utility functions used for the R package development infrastructure inside the data integration centers ('DIZ') to standardize and facilitate repetitive tasks such as setting up a database connection or issuing notification messages and to avoid redundancy.
Maintained by Jonathan M. Mang. Last updated 16 days ago.
3 stars 4.73 score 2 scripts 3 dependents
r4epi
sitrep:Report templates and helper functions for applied epidemiology
Report templates and helper functions for applied epidemiology.
Maintained by Alexander Spina. Last updated 28 days ago.
epidemiologymsfoutbreaksreport-generator
41 stars 4.46 score 9 scripts
gchung05
mds:Medical Devices Surveillance
A set of core functions for handling medical device event data in the context of post-market surveillance, pharmacovigilance, signal detection and trending, and regulatory reporting. Primary inputs are data on events by device and data on exposures by device. Outputs include: standardized device-event and exposure datasets, defined analyses, and time series.
Maintained by Gary Chung. Last updated 5 years ago.
1 stars 4.43 score 27 scriptsmiracum
DQAgui:Graphical User Interface for Data Quality Assessment
A graphical user interface (GUI) to the functions implemented in the R package 'DQAstats'. Publication: Mang et al. (2021) <doi:10.1186/s12911-022-01961-z>.
Maintained by Lorenz A. Kapsner. Last updated 2 months ago.
2 stars 4.15 score 10 scripts
noonanm
ctpm:Continuous-Time Phylogenetic Modeling
Functions for identifying, fitting, and applying continuous-time stochastic models to phylogenetic data. The package is based on methods introduced in Fleming et al (2014) <doi:10.1086/675504>.
Maintained by Michael Noonan. Last updated 3 years ago.
3.70 score 9 scripts
jsta
nesRdata:National Eutrophication Survey Data
Serves data from the United States Environmental Protection Agency (USEPA) National Eutrophication Survey <https://www.epa.gov/national-aquatic-resource-surveys>.
Maintained by Jemma Stachelek. Last updated 1 years ago.
3 stars 3.18 score 9 scripts
timothyvigers
cgmanalysis:Clean and Analyze Continuous Glucose Monitor Data
This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Maintained by Tim Vigers. Last updated 2 months ago.
4 stars 2.77 score 37 scripts
ikosmidis
semnar:Constructing and Interacting with Databases of Presentations
Provides methods for constructing and maintaining a database of presentations in R. The presentations are either ones that the user gives or gave or presentations at a particular event or event series. The package also provides a plot method for the interactive mapping of the presentations using 'leaflet' by grouping them according to country, city, year and other presentation attributes. The markers on the map come with popups providing presentation details (title, institution, event, links to materials and events, and so on).
Maintained by Ioannis Kosmidis. Last updated 8 months ago.
2.70 score
dsjohnson
ctmmUtils:Auxillary functions for using the {ctmm} package efficiently
Utility functions to augment the the {ctmm} package. The additional function are targeted toward analysis of marine mammal telemetry, but can be used or easily modified for other situations.
Maintained by Devin S. Johnson. Last updated 4 months ago.
2.40 scoredsjohnson
walk:Model Animal Movement With Continuous-Time Markov Chains
Model animal movement using continuous-time Markov chain models.
Maintained by Devin S. Johnson. Last updated 11 months ago.
2.30 score 1 scripts
robitalec
preparelocs:Prepares Relocations For The WEEL
Prepares animal relocation datasets for the Wildlife Evolutionary Ecology Lab at Memorial University.
Maintained by Alec L. Robitaille. Last updated 1 years ago.
animalanimal-movementgpstargets
1.70 score
amoeba
eatocsv:Download and extract Entity-Attribute metadata into a CSV
Downloads and extracts Entity-Attribute metadata from EML documents stored in a DataONE Member Node
Maintained by Bryce Mecum. Last updated 4 years ago.
1.70 score 5 scripts
cran
matman:Material Management
A set of functions, classes and methods for performing ABC and ABC/XYZ analyses, identifying overperforming, underperforming and constantly performing items, and plotting, analyzing as well as predicting the temporal development of items.
Maintained by Leon Binder. Last updated 3 years ago.
1.00 score