Showing 11 of total 11 results (show query)
ropensci
EML:Read and Write Ecological Metadata Language Files
Work with Ecological Metadata Language ('EML') files. 'EML' is a widely used metadata standard in the ecological and environmental sciences, described in Jones et al. (2006), <doi:10.1146/annurev.ecolsys.37.091305.110031>.
Maintained by Carl Boettiger. Last updated 3 years ago.
emleml-metadatametadata-standard
97 stars 11.19 score 378 scripts 7 dependents
nceas
metajam:Easily Download Data and Metadata from 'DataONE'
A set of tools to foster the development of reproducible analytical workflow by simplifying the download of data and metadata from 'DataONE' (<https://www.dataone.org>) and easily importing this information into R.
Maintained by Julien Brun. Last updated 7 months ago.
datadata-analysismetadatarepositories
16 stars 8.21 score 75 scripts
ediorg
ecocomDP:Tools to Create, Use, and Convert ecocomDP Data
Work with the Ecological Community Data Design Pattern. 'ecocomDP' is a flexible data model for harmonizing ecological community surveys, in a research question agnostic format, from source data published across repositories, and with methods that keep the derived data up-to-date as the underlying sources change. Described in O'Brien et al. (2021), <doi:10.1016/j.ecoinf.2021.101374>.
Maintained by Colin Smith. Last updated 7 months ago.
32 stars 7.74 score 77 scriptsropensci
emld:Ecological Metadata as Linked Data
This is a utility for transforming Ecological Metadata Language ('EML') files into 'JSON-LD' and back into 'EML.' Doing so creates a list-based representation of 'EML' in R, so that 'EML' data can easily be manipulated using standard 'R' tools. This makes this package an effective backend for other 'R'-based tools working with 'EML.' By abstracting away the complexity of 'XML' Schema, developers can build around native 'R' list objects and not have to worry about satisfying many of the additional constraints of set by the schema (such as element ordering, which is handled automatically). Additionally, the 'JSON-LD' representation enables the use of developer-friendly 'JSON' parsing and serialization that may facilitate the use of 'EML' in contexts outside of 'R,' as well as the informatics-friendly serializations such as 'RDF' and 'SPARQL' queries.
Maintained by Carl Boettiger. Last updated 4 years ago.
13 stars 7.63 score 69 scripts 8 dependentsropensci
dataspice:Create Lightweight Schema.org Descriptions of Data
The goal of 'dataspice' is to make it easier for researchers to create basic, lightweight, and concise metadata files for their datasets. These basic files can then be used to make useful information available during analysis, create a helpful dataset "README" webpage, and produce more complex metadata formats to aid dataset discovery. Metadata fields are based on the 'Schema.org' and 'Ecological Metadata Language' standards.
Maintained by Bryce Mecum. Last updated 4 years ago.
datadatasetmetadataschema-orgunconfunconf18
162 stars 7.45 score 25 scripts
inbo
camtraptor:Read, Explore and Visualize Camera Trap Data Packages
Read, explore and visualize Camera Trap Data Packages (Camtrap DP). 'Camtrap DP' (<https://camtrap-dp.tdwg.org>) is a community developed data exchange format for this type of data. With camtraptor you can read and filter data, create overviews of observed species, relative abundance or effort, and plot these data on a map.
Maintained by Damiano Oldoni. Last updated 1 months ago.
12 stars 6.27 score 16 scriptsinbo
camtrapdp:Read and Manipulate Camera Trap Data Packages
Read and manipulate Camera Trap Data Packages ('Camtrap DP'). 'Camtrap DP' (<https://camtrap-dp.tdwg.org>) is a data exchange format for camera trap data. With 'camtrapdp' you can read, filter and transform data (including to Darwin Core) before further analysis in e.g. 'camtraptor' or 'camtrapR'.
Maintained by Peter Desmet. Last updated 22 days ago.
7 stars 5.67 score 12 scripts
dieghernan
pkgdev:Helpers to Develop a Package using GitHub Actions
A small set of functions that takes advantage of GitHub Actions for making your life easier as a R package developer. This package is primarily intended for personal use, however feel free to use it (at your own risk :)).
Maintained by Diego Hernangómez. Last updated 4 days ago.
developer-toolsexperimentalgithub-actions
4 stars 5.00 score 7 scriptsinbo
movepub:Prepare Movebank Data for Publication
Prepare animal tracking data from 'Movebank' (<https://movebank.org>) for publication in a research repository. With 'movepub' you can document data with metadata following the Data Package standard and transform these to Darwin Core and Ecological Metadata Language ('EML') for publication to the Global Biodiversity Information Facility ('GBIF') and the Ocean Biodiversity Information System ('OBIS').
Maintained by Peter Desmet. Last updated 16 days ago.
3 stars 4.65 score 5 scripts
luomus
f2g:FinBIF to GBIF
Tools for publishing FinBIF data to GBIF.
Maintained by William K. Morris. Last updated 5 days ago.
1 stars 3.02 score
