Showing 27 of total 27 results (show query)
greta-dev
greta:Simple and Scalable Statistical Modelling in R
Write statistical models in R and fit them by MCMC and optimisation on CPUs and GPUs, using Google 'TensorFlow'. greta lets you write your own model like in BUGS, JAGS and Stan, except that you write models right in R, it scales well to massive datasets, and it’s easy to extend and build on. See the website for more information, including tutorials, examples, package documentation, and the greta forum.
Maintained by Nicholas Tierney. Last updated 22 days ago.
566 stars 12.53 score 396 scripts 6 dependents
rjournal
rjtools:Preparing, Checking, and Submitting Articles to the 'R Journal'
Create an 'R Journal' 'Rmarkdown' template article, that will generate html and pdf versions of your paper. Check that the paper folder has all the required components needed for submission. Examples of 'R Journal' publications can be found at <https://journal.r-project.org>.
Maintained by Di Cook. Last updated 2 months ago.
33 stars 8.81 score 37 scripts 1 dependents
poissonconsulting
ypr:Yield Per Recruit
An implementation of equilibrium-based yield per recruit methods. Yield per recruit methods can used to estimate the optimal yield for a fish population as described by Walters and Martell (2004) <isbn:0-691-11544-3>. The yield can be based on the number of fish caught (or harvested) or biomass caught for all fish or just large (trophy) individuals.
Maintained by Joe Thorley. Last updated 3 months ago.
7 stars 7.84 score 55 scripts 1 dependents
rmi-pacta
pacta.multi.loanbook:Run 'PACTA' on Multiple Loan Books Easily
Run Paris Agreement Capital Transition Assessment ('PACTA') analyses on multiple loan books in a structured way. Provides access to standard 'PACTA' metrics and additional 'PACTA'-related metrics for multiple loan books. Results take the form of 'csv' files and plots and are exported to user-specified project paths.
Maintained by Jacob Kastl. Last updated 19 days ago.
climate-changepactapactaversesustainable-finance
6.48 score 4 scripts
abhi-1u
texor:Converting 'LaTeX' 'R Journal' Articles into 'RJ-web-articles'
Articles in the 'R Journal' were first authored in 'LaTeX', which performs admirably for 'PDF' files but is less than ideal for modern online interfaces. The 'texor' package does all the transitional chores and conversions necessary to move to the online versions.
Maintained by Abhishek Ulayil. Last updated 12 hours ago.
7 stars 6.36 score 8 scriptsgreta-dev
greta.gp:Gaussian Process Modelling in 'greta'
Provides a syntax to create and combine Gaussian process kernels in 'greta'. You can then them to define either full rank or sparse Gaussian processes. This is an extension to the 'greta' software, Golding (2019) <doi:10.21105/joss.01601>.
Maintained by Nicholas Tierney. Last updated 3 months ago.
19 stars 6.33 score 28 scriptsgreta-dev
greta.gam:Generalised Additive Models in 'greta' using 'mgcv'
A 'greta' (Golding (2019) <doi:10.21105/joss.01601>) module that lets you use 'mgcv' smoother functions and formula syntax to define smooth terms for use in a 'greta' model. You can then define your own likelihood to complete the model, and fit it by Markov Chain Monte Carlo (MCMC).
Maintained by Nicholas Tierney. Last updated 3 months ago.
11 stars 6.04 score 6 scriptsgreta-dev
greta.dynamics:Modelling Structured Dynamical Systems in 'greta'
A 'greta' extension for analysing transition matrices and ordinary differential equations representing dynamical systems. Provides functions for analysing transition matrices by iteration, and solving ordinary differential equations. This is an extension to the 'greta' software, Golding (2019) <doi:10.21105/joss.01601>.
Maintained by Nicholas Tierney. Last updated 5 months ago.
6 stars 5.72 score 11 scripts
thinkr-open
lozen:Management tools for missions
Management tools for missions (internal and external). Includes weekly, GL projects, etc.
Maintained by Sébastien Rochette. Last updated 12 months ago.
7 stars 5.42 score 14 scriptspoissonconsulting
sims:Simulate Data from R or 'JAGS' Code
Generates data from R or 'JAGS' code for use in simulation studies. The data are returned as an 'nlist::nlists' object and/or saved to file as individual '.rds' files. Parallelization is implemented using the 'future' package. Progress is reported using the 'progressr' package.
Maintained by Audrey Beliveau. Last updated 3 months ago.
5.38 score 6 scripts
bioc
HubPub:Utilities to create and use Bioconductor Hubs
HubPub provides users with functionality to help with the Bioconductor Hub structures. The package provides the ability to create a skeleton of a Hub style package that the user can then populate with the necessary information. There are also functions to help add resources to the Hub package metadata files as well as publish data to the Bioconductor S3 bucket.
Maintained by Kayla Interdonato. Last updated 19 days ago.
dataimportinfrastructuresoftwarethirdpartyclientbioconductor-package
3 stars 5.18 score 4 scripts
vincentguyader
shiny2docker:Generate Dockerfiles for 'Shiny' Applications
Automates the creation of Dockerfiles for deploying 'Shiny' applications. By integrating with 'renv' for dependency management and leveraging Docker-based solutions, it simplifies the process of containerizing 'Shiny' apps, ensuring reproducibility and consistency across different environments. Additionally, it facilitates the setup of CI/CD pipelines for building Docker images on both GitLab and GitHub.
Maintained by Vincent Guyader. Last updated 2 months ago.
8 stars 4.90 scorepoissonconsulting
batchr:Batch Process Files
Processes multiple files with a user-supplied function. The key design principle is that only files which were last modified before the directory was configured are processed. A hidden file stores the configuration time and function etc while successfully processed files are automatically touched to update their modification date. As a result batch processing can be stopped and restarted and any files created (or modified or deleted) during processing are ignored.
Maintained by Joe Thorley. Last updated 3 months ago.
6 stars 4.56 score 8 scriptsbioc
BiocBook:Write, containerize, publish and version Quarto books with Bioconductor
A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).
Maintained by Jacques Serizay. Last updated 5 months ago.
infrastructurereportwritingsoftware
3 stars 4.48 score 4 scripts
helske
changer:Change R Package Name
Changing the name of an existing R package is annoying but common task especially in the early stages of package development. This package (mostly) automates this task.
Maintained by Jouni Helske. Last updated 3 years ago.
47 stars 4.37 score 2 scriptspoissonconsulting
shinyypr:Run ypr Shiny App
A user interface to the 'ypr' R package. 'Ypr' implements equilibrium-based yield per recruit methods for estimating the optimal yield for a fish population.
Maintained by Ayla Pearson. Last updated 3 months ago.
3 stars 4.26 score 3 scriptspoissonconsulting
subfoldr2:Save and Load R Objects
Facilitates saving and loading R objects, data frames, tables, plots, text blocks and numbers to subfolders.
Maintained by Joe Thorley. Last updated 30 days ago.
2 stars 3.70 score 5 scripts
hypertidy
ffraster:Native Raster Files
Provides a loose couplings between the facilities of `raster` and `ff`, to allow a file-backed raster grid to be modified as if it were an array in memory.
Maintained by Michael D. Sumner. Last updated 6 years ago.
5 stars 3.40 score 9 scripts
notplancha
settingsSync:'Rstudio' Addin to Sync Settings and Keymaps
Provides a 'Rstudio' addin to download, merge and upload 'Rstudio' settings and keymaps, essentially 'syncing them' at will. It uses 'Google Drive' as a cloud storage to keep the settings and keymaps files.
Maintained by André Plancha. Last updated 10 months ago.
google-driverstudiorstudio-addin
2 stars 3.30 score
mtwesley
greta.censored:Censored Distributions for 'greta'
Provides additional censored distributions for use with 'greta', a probabilistic programming framework for Bayesian modeling. Includes censored versions of Normal, Log-Normal, Student's T, Gamma, Exponential, Weibull, Pareto, and Beta distributions with support for right, left, and interval censoring. For details on 'greta', see Golding (2019) <doi:10.21105/joss.01601>. The methods are implemented using 'TensorFlow' and 'TensorFlow Probability' for efficient computation.
Maintained by Mlen-Too Wesley. Last updated 4 months ago.
1 stars 3.30 score 5 scriptsgreta-dev
greta.distributions:Extends Distributions Available in the 'greta' Package
Provides extra distributions for use with the 'greta' package. These will include distributions such as zero inflated negative binomial, zero inflated poisson, interval censored lognormal, and more.
Maintained by Nicholas Tierney. Last updated 3 months ago.
1 stars 2.78 score 1 scripts
mattroumaya
jdenticon:A Wrapper for the Node.js 'Jdenticon' Library
A Wrapper for the Node.js 'Jdenticon' <https://jdenticon.com/> Library. Uses 'esbuild' <https://esbuild.github.io/> to reduce user dependencies.
Maintained by Matt Roumaya. Last updated 2 years ago.
1 stars 2.70 score 4 scriptsgreta-dev
greta.hmm:Hidden Markov Modelling in greta
Extends greta by providing functionality for fitting Hidden Markov Models (HMMs).
Maintained by Nick Golding. Last updated 6 years ago.
3 stars 2.48 score 1 scripts
paithiov909
ldccr:Utilities for Various Japanese Corpora
The goal of ldccr package is to make easy to use Japanese language resources. This package provides parsers for several Japanese corpora that are free or open licensed and a downloader of zipped text files published on Aozora Bunko.
Maintained by Akiru Kato. Last updated 1 months ago.
1 stars 2.40 score 1 scriptshypertidy
tidyff:Create Native raster Files With ff
Couplings between raster and ff files.
Maintained by Michael D. Sumner. Last updated 8 years ago.
1 stars 1.70 score 6 scripts
emptyfield-ds
rpkg.workshop:Install Materials for Developing R Packages
Install learning materials for Developing R Packages.
Maintained by Malcolm Barrett. Last updated 3 years ago.
1.70 score 1 scripts
aviezerl
labNorm:Normalize Laboratory Measurements by Age and Sex
Provides functions for normalizing standard laboratory measurements (e.g. hemoglobin, cholesterol levels) according to age and sex, based on the algorithms described in "Personalized lab test models to quantify disease potentials in healthy individuals" (Netta Mendelson Cohen, Omer Schwartzman, Ram Jaschek, Aviezer Lifshitz, Michael Hoichman, Ran Balicer, Liran I. Shlush, Gabi Barbash & Amos Tanay, <doi:10.1038/s41591-021-01468-6>). Allows users to easily obtain normalized values for standard lab results, and to visualize their distributions. See more at <https://tanaylab.weizmann.ac.il/labs/>.
Maintained by Aviezer Lifshitz. Last updated 2 years ago.
1.70 score 7 scripts