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CopyNumberPlots:Create Copy-Number Plots using karyoploteR functionality
CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.
Maintained by Bernat Gel. Last updated 5 months ago.
visualizationcopynumbervariationcoverageonechanneldataimportsequencingdnaseqbioconductorbioconductor-packagebioinformaticscopy-number-variationgenomicsgenomics-visualization
6 stars 6.24 score 16 scripts 2 dependentsbioc
multicrispr:Multi-locus multi-purpose Crispr/Cas design
This package is for designing Crispr/Cas9 and Prime Editing experiments. It contains functions to (1) define and transform genomic targets, (2) find spacers (4) count offtarget (mis)matches, and (5) compute Doench2016/2014 targeting efficiency. Care has been taken for multicrispr to scale well towards large target sets, enabling the design of large Crispr/Cas9 libraries.
Maintained by Aditya Bhagwat. Last updated 4 months ago.
5.56 score 2 scriptsbioc
CNVfilteR:Identifies false positives of CNV calling tools by using SNV calls
CNVfilteR identifies those CNVs that can be discarded by using the single nucleotide variant (SNV) calls that are usually obtained in common NGS pipelines.
Maintained by Jose Marcos Moreno-Cabrera. Last updated 5 months ago.
copynumbervariationsequencingdnaseqvisualizationdataimport
5 stars 5.18 score 1 scriptsbioc
CNViz:Copy Number Visualization
CNViz takes probe, gene, and segment-level log2 copy number ratios and launches a Shiny app to visualize your sample's copy number profile. You can also integrate loss of heterozygosity (LOH) and single nucleotide variant (SNV) data.
Maintained by Rebecca Greenblatt. Last updated 5 months ago.
visualizationcopynumbervariationsequencingdnaseq
3.30 score 1 scripts