Showing 18 of total 18 results (show query)
bioc
psichomics:Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Interactive R package with an intuitive Shiny-based graphical interface for alternative splicing quantification and integrative analyses of alternative splicing and gene expression based on The Cancer Genome Atlas (TCGA), the Genotype-Tissue Expression project (GTEx), Sequence Read Archive (SRA) and user-provided data. The tool interactively performs survival, dimensionality reduction and median- and variance-based differential splicing and gene expression analyses that benefit from the incorporation of clinical and molecular sample-associated features (such as tumour stage or survival). Interactive visual access to genomic mapping and functional annotation of selected alternative splicing events is also included.
Maintained by Nuno Saraiva-Agostinho. Last updated 5 months ago.
sequencingrnaseqalternativesplicingdifferentialsplicingtranscriptionguiprincipalcomponentsurvivalbiomedicalinformaticstranscriptomicsimmunooncologyvisualizationmultiplecomparisongeneexpressiondifferentialexpressionalternative-splicingbioconductordata-analysesdifferential-gene-expressiondifferential-splicing-analysisgene-expressiongtexrecount2rna-seq-datasplicing-quantificationsratcgavast-toolscpp
36 stars 6.95 score 31 scriptsbioc
Prostar:Provides a GUI for DAPAR
This package provides a GUI interface for the DAPAR package. The package Prostar (Proteomics statistical analysis with R) is a Bioconductor distributed R package which provides all the necessary functions to analyze quantitative data from label-free proteomics experiments. Contrarily to most other similar R packages, it is endowed with rich and user-friendly graphical interfaces, so that no programming skill is required.
Maintained by Samuel Wieczorek. Last updated 5 months ago.
proteomicsmassspectrometrynormalizationpreprocessingsoftwareguiprostar1
1 stars 6.48 score 15 scriptsbioc
DAPAR:Tools for the Differential Analysis of Proteins Abundance with R
The package DAPAR is a Bioconductor distributed R package which provides all the necessary functions to analyze quantitative data from label-free proteomics experiments. Contrarily to most other similar R packages, it is endowed with rich and user-friendly graphical interfaces, so that no programming skill is required (see `Prostar` package).
Maintained by Samuel Wieczorek. Last updated 5 months ago.
proteomicsnormalizationpreprocessingmassspectrometryqualitycontrolgodataimportprostar1
2 stars 5.42 score 22 scripts 1 dependentsbioc
omXplore:Vizualization tools for 'omics' datasets with R
This package contains a collection of functions (written as shiny modules) for the visualisation and the statistical analysis of omics data. These plots can be displayed individually or embedded in a global Shiny module. Additionaly, it is possible to integrate third party modules to the main interface of the package omXplore.
Maintained by Samuel Wieczorek. Last updated 5 days ago.
softwareshinyappsmassspectrometrydatarepresentationguiqualitycontrolprostar2
5.32 score 23 scriptsbioc
cTRAP:Identification of candidate causal perturbations from differential gene expression data
Compare differential gene expression results with those from known cellular perturbations (such as gene knock-down, overexpression or small molecules) derived from the Connectivity Map. Such analyses allow not only to infer the molecular causes of the observed difference in gene expression but also to identify small molecules that could drive or revert specific transcriptomic alterations.
Maintained by Nuno Saraiva-Agostinho. Last updated 5 months ago.
differentialexpressiongeneexpressionrnaseqtranscriptomicspathwaysimmunooncologygenesetenrichmentbioconductorbioinformaticscmapgene-expressionl1000
5 stars 5.08 score 16 scripts
korap
RKorAPClient:'KorAP' Web Service Client Package
A client package that makes the 'KorAP' web service API accessible from R. The corpus analysis platform 'KorAP' has been developed as a scientific tool to make potentially large, stratified and multiply annotated corpora, such as the 'German Reference Corpus DeReKo' or the 'Corpus of the Contemporary Romanian Language CoRoLa', accessible for linguists to let them verify hypotheses and to find interesting patterns in real language use. The 'RKorAPClient' package provides access to 'KorAP' and the corpora behind it for user-created R code, as a programmatic alternative to the 'KorAP' web user-interface. You can learn more about 'KorAP' and use it directly on 'DeReKo' at <https://korap.ids-mannheim.de/>.
Maintained by Marc Kupietz. Last updated 1 months ago.
6 stars 4.77 score 30 scripts
javierdelahoz
LDAShiny:User-Friendly Interface for Review of Scientific Literature
Contains the development of a tool that provides a web-based graphical user interface (GUI) to perform a review of the scientific literature under the Bayesian approach of Latent Dirichlet Allocation (LDA)and machine learning algorithms. The application methodology is framed by the well known procedures in topic modelling on how to clean and process data. Contains methods described by Blei, David M., Andrew Y. Ng, and Michael I. Jordan (2003) <https://jmlr.org/papers/volume3/blei03a/blei03a.pdf> Allocation"; Thomas L. Griffiths and Mark Steyvers (2004) <doi:10.1073/pnas.0307752101> ; Xiong Hui, et al (2019) <doi:10.1016/j.cie.2019.06.010>.
Maintained by Javier De La Hoz Maestre. Last updated 4 years ago.
3 stars 4.48 score 3 scripts
aymennasri
ggfootball:Plotting Football Matches Expected Goals (xG) Stats with 'Understat' Data
Scrapes football match shots data from 'Understat' <https://understat.com/> and visualizes it using interactive plots: - A detailed shot map displaying the location, type, and xG value of shots taken by both teams. - An xG timeline chart showing the cumulative xG for each team over time, annotated with the details of scored goals.
Maintained by Aymen Nasri. Last updated 11 days ago.
footballfootball-analyticsfootball-datafootball-scoressoccersoccer-analyticssoccer-datasports-dataunderstat
1 stars 3.54 score 10 scripts
nenuial
ggeo:Themes and Helpers for ggplot2
This package provides helper functions for ggplot graphs and maps.
Maintained by Pascal Burkhard. Last updated 1 months ago.
1 stars 3.52 score 2 dependents
epicentre-msf
epishiny:Tools for interactive visualisation of epidemiological data
Time, place and person analysis using the R shiny web-framework.
Maintained by Paul Cambpell. Last updated 2 days ago.
10 stars 3.11 score 13 scriptsnenuial
geographer:Geography Vizualisations
Provides function and objects to establish vizualisations for my Geography lessons.
Maintained by Pascal Burkhard. Last updated 1 months ago.
2 stars 3.08 score
pilacuan-bonete-luis
LDABiplots:Biplot Graphical Interface for LDA Models
Contains the development of a tool that provides a web-based graphical user interface (GUI) to perform Biplots representations from a scraping of news from digital newspapers under the Bayesian approach of Latent Dirichlet Assignment (LDA) and machine learning algorithms. Contains LDA methods described by Blei , David M., Andrew Y. Ng and Michael I. Jordan (2003) <https://jmlr.org/papers/volume3/blei03a/blei03a.pdf>, and Biplot methods described by Gabriel K.R(1971) <doi:10.1093/biomet/58.3.453> and Galindo-Villardon P(1986) <https://diarium.usal.es/pgalindo/files/2012/07/Questiio.pdf>.
Maintained by Luis Pilacuan-Bonete. Last updated 3 years ago.
3.00 score 4 scripts
cran
BRVM:Retrieve Historical Data of Companies Listed on the 'BRVM' Stock Exchange
Provide real-time access to data from the Regional Securities Exchange SA(<https://www.brvm.org/en>), commonly known as the 'BRVM' stock exchange. The goal is to facilitate data access for users of the R programming language. The package includes a variety of data that can be accessed by calling functions.
Maintained by Sessie Koffi Frederic. Last updated 1 years ago.
2.70 scorenenuial
geovizr:Support for Knitr (Quarto/Rmd)
Provide support functions for Quarto and Rmd documents.
Maintained by Pascal Burkhard. Last updated 1 months ago.
2.60 score 3 scripts
skranz
shinyChatQuiz:Shiny app for online lecture support with chat and quizzes
Shiny app for online lecture support with chat and quizzes
Maintained by Sebastian Kranz. Last updated 4 years ago.
1 stars 1.70 score 1 scripts
javierrojasc
AovBay:Classic, Nonparametric and Bayesian One-Way Analysis of Variance Panel
It covers various approaches to analysis of variance, provides an assumption testing section in order to provide a decision diagram that allows selecting the most appropriate technique. It provides the classical analysis of variance, the nonparametric equivalent of Kruskal Wallis, and the Bayesian approach. These results are shown in an interactive shiny panel, which allows modifying the arguments of the tests, contains interactive graphics and presents automatic conclusions depending on the tests in order to contribute to the interpretation of these analyzes. 'AovBay' uses 'Stan' and 'FactorBayes' for Bayesian analysis and 'Highcharts' for interactive charts.
Maintained by Mauricio Rojas-Campuzano. Last updated 4 years ago.
1.00 score
wilsonrp
T2Qv:Control Qualitative Variables
Covers k-table control analysis using multivariate control charts for qualitative variables using fundamentals of multiple correspondence analysis and multiple factor analysis. The graphs can be shown in a flat or interactive way, in the same way all the outputs can be shown in an interactive shiny panel.
Maintained by Wilson Rojas-Preciado. Last updated 1 years ago.
1.00 score