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tiledb-inc

tiledb:Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays

The modern database 'TileDB' introduces a powerful on-disk format for storing and accessing any complex data based on multi-dimensional arrays. It supports dense and sparse arrays, dataframes and key-values stores, cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression, encryption and checksum filters, uses a fully multi-threaded implementation, supports parallel I/O, data versioning ('time travel'), metadata and groups. It is implemented as an embeddable cross-platform C++ library with APIs from several languages, and integrations. This package provides the R support.

Maintained by Isaiah Norton. Last updated 5 days ago.

arrayhdfss3storage-managertiledbcpp

108 stars 11.79 score 306 scripts 4 dependents

eddelbuettel

nanotime:Nanosecond-Resolution Time Support for R

Full 64-bit resolution date and time functionality with nanosecond granularity is provided, with easy transition to and from the standard 'POSIXct' type. Three additional classes offer interval, period and duration functionality for nanosecond-resolution timestamps.

Maintained by Dirk Eddelbuettel. Last updated 20 hours ago.

datetimedatetimesnanosecond-resolutionnanosecondscpp

53 stars 10.96 score 134 scripts 18 dependents

dreamrs

shinylogs:Record Everything that Happens in a 'Shiny' Application

Track and record the use of applications and the user's interactions with 'Shiny' inputs. Allows to trace the inputs with which the user interacts, the outputs generated, as well as the errors displayed in the interface.

Maintained by Victor Perrier. Last updated 6 months ago.

logsshinyshinyapps

99 stars 8.71 score 105 scripts 5 dependents

bioc

TileDBArray:Using TileDB as a DelayedArray Backend

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Maintained by Aaron Lun. Last updated 5 months ago.

datarepresentationinfrastructuresoftware

10 stars 6.89 score 26 scripts 1 dependents

chanzuckerberg

cellxgene.census:CZ CELLxGENE Discover Cell Census

API to facilitate the use of the CZ CELLxGENE Discover Census. For more information about the API and the project visit https://github.com/chanzuckerberg/cellxgene-census/

Maintained by Chan Zuckerberg Initiative Foundation. Last updated 6 months ago.

96 stars 6.60 score 15 scripts

eddelbuettel

dtts:'data.table' Time-Series

High-frequency time-series support via 'nanotime' and 'data.table'.

Maintained by Dirk Eddelbuettel. Last updated 3 months ago.

cpp

14 stars 4.92 score 3 scripts

rafael-ayala

asteRisk:Computation of Satellite Position

Provides basic functionalities to calculate the position of satellites given a known state vector. The package includes implementations of the SGP4 and SDP4 simplified perturbation models to propagate orbital state vectors, as well as utilities to read TLE files and convert coordinates between different frames of reference. Several of the functionalities of the package (including the high-precision numerical orbit propagator) require the coefficients and data included in the 'asteRiskData' package, available in a 'drat' repository. To install this data package, run 'install.packages("asteRiskData", repos="https://rafael-ayala.github.io/drat/")'. Felix R. Hoots, Ronald L. Roehrich and T.S. Kelso (1988) <https://celestrak.org/NORAD/documentation/spacetrk.pdf>. David Vallado, Paul Crawford, Richard Hujsak and T.S. Kelso (2012) <doi:10.2514/6.2006-6753>. Felix R. Hoots, Paul W. Schumacher Jr. and Robert A. Glover (2014) <doi:10.2514/1.9161>.

Maintained by Rafael Ayala. Last updated 11 months ago.

cpp

6 stars 4.74 score 23 scripts

bioc

GNOSIS:Genomics explorer using statistical and survival analysis in R

GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.

Maintained by Lydia King. Last updated 5 months ago.

softwareshinyappssurvivalgui

5 stars 4.70 score 2 scripts

bioc

beachmat.tiledb:beachmat bindings for TileDB-backed matrices

Extends beachmat to initialize tatami matrices from TileDB-backed arrays. This allows C++ code in downstream packages to directly call the TileDB C/C++ library to access array data, without the need for block processing via DelayedArray. Developers only need to import this package to automatically extend the capabilities of beachmat::initializeCpp to TileDBArray instances.

Maintained by Aaron Lun. Last updated 4 months ago.

datarepresentationdataimportinfrastructurecpp

4.65 score 4 scripts

learnitr

learnitdown:R Markdown, Bookdown and Learnr Additions for Learning Material

Extension to R Markdown, Bookdown and Learnr for building better learning and e-learning material: H5P integration, course-contextual divs, differed loading of Shiny and learnr applications, and much more ...

Maintained by Philippe Grosjean. Last updated 7 months ago.

bookdownlearning-resourcesr-markdownteaching-materials

13 stars 4.49 score 16 scripts

influxdata

influxdbclient:'InfluxDB' 2.x Client

'InfluxDB' 2.x time-series database client. Supports both 'InfluxDB' OSS (<https://portal.influxdata.com/downloads/>) and Cloud (<https://cloud2.influxdata.com/>) version.

Maintained by Ales Pour. Last updated 2 years ago.

14 stars 4.40 score 12 scripts 1 dependents

davzim

RITCH:R Parser for the ITCH-Protocol

Allows to efficiently parse, filter, and write binary ITCH Files (Version 5.0) containing detailed financial transactions as distributed by NASDAQ to an R data.table.

Maintained by David Zimmermann-Kollenda. Last updated 7 months ago.

cppitchrdatatablecpp

18 stars 4.32 score 23 scripts

kwb-r

kwb.pilot:Importing, Aggregating and Visualising Data From KWB Pilot Plants

Collects, aggregates and visualises operational and analytical data from water suppliers (including a standardised reporting document).

Maintained by Michael Rustler. Last updated 2 years ago.

data-aggregationdata-importdata-visualisationproject-aquanesproject-mbr40project-sulemanproject-ultimate

1 stars 4.01 score 17 scripts

pr2database

pr2database:PR2 database with shiny web interface

PR2 database See https://pr2-database.org

Maintained by Daniel Vaulot. Last updated 2 years ago.

18s-rrnadatabaseeukaryotesmetabarcodingrrnataxonomy

80 stars 3.60 score 7 scripts

dipterix

bidsr:A Brain Imaging Data Structure ('BIDS') Parser

Parse and read the files that comply with the brain imaging data structure, or 'BIDS' format, see the publication from Gorgolewski, K., Auer, T., Calhoun, V. et al. (2016) <doi:10.1038/sdata.2016.44>. Provides query functions to extract and check the 'BIDS' entity information (such as subject, session, task, etc.) from the file paths and suffixes according to the specification. The package is developed and used in the reproducible analysis and visualization of intracranial electroencephalography, or 'RAVE', see Magnotti, J. F., Wang, Z., and Beauchamp, M. S. (2020) <doi:10.1016/j.neuroimage.2020.117341>; see 'citation("bidsr")' for details and attributions.

Maintained by Zhengjia Wang. Last updated 19 hours ago.

3.30 score

iiasa

ODPSCP:A standard reporting protocol for conservation planning

This repository contains the environment and shiny code underlying the reporting protocol.

Maintained by Martin Jung. Last updated 6 hours ago.

conservation-prioritizationprotocolr-shinystandardsystematic-conservation-planning

1 stars 2.70 score 1 scripts

jtagusari

shinyHugePlot:Efficient Plotting of Large-Sized Data

A tool to plot data with a large sample size using 'shiny' and 'plotly'. Relatively small samples are obtained from the original data using a specific algorithm. The samples are updated according to a user-defined x range. Jonas Van Der Donckt, Jeroen Van Der Donckt, Emiel Deprost (2022) <https://github.com/predict-idlab/plotly-resampler>.

Maintained by Junta Tagusari. Last updated 6 months ago.

4 stars 2.30 score 3 scripts

pr2database

metapr2:Eukaryotic 18S rRNA metabarcode database

Provides an interface to the metaPR2 database (current version = 1.0) which contains eukaryotic 18S rRNA metabarcodes. Many options for selecting samples are provided. Data can be displayed as maps, barplots, treemaps. Data can be searched and downloaded. See https://pr2-database.org for more information.

Maintained by Daniel Vaulot. Last updated 1 years ago.

18s-rrnametabarcodingshiny-apps

3 stars 2.18 score

rogiersbart

ra:A minimal TileDB-backed lazy multi-dimensional array implementation with metadata

The {ra} package provides a wrapper around the low-level {tiledb} API and {jsonlite}, to implement a minimal lazy multi-dimensional array with arbitrary metadata support.

Maintained by Bart Rogiers. Last updated 9 months ago.

1.70 score

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