| abseil | Extensions to the C++ standard library | libabsl-dev
| bigrquerystorage bigrquerystorage |
|---|
| alsa-lib | Shared library for ALSA applications | libasound2-dev
| harmonium |
|---|
| apparmor | Changehat AppArmor library | libapparmor-dev
| RAppArmor RAppArmor unix unix |
|---|
| arpack | Fortran77 subroutines to solve large scale eigenvalue problems | libarpack2-dev
| rlibkriging rlibkriging speakeasyR speakeasyR |
|---|
| atkmm | C++ wrappers for ATK accessibility toolkit | libatkmm-1.6-dev
| HilbertVisGUI |
|---|
| bzip2 | High-quality block-sorting file compressor library | libbz2-dev
| bamsignals csaw deepSNV DiffBind diffHic epialleleR FLAMES GMMAT GMMAT h5vc iscream jackalope jackalope maftools methylKit mitoClone2 podkat QuasR raer Rhtslib Rsamtools scPipe seqminer seqminer VariantAnnotation vcfppR vcfppR |
|---|
| c-blosc | High performance meta-compressor optimized for binary data | libblosc-dev
| blosc blosc Rarr Rarr Rarr |
|---|
| cairo | Cairo 2D vector graphics library | libcairo2-dev
| Cairo Cairo gdtools gdtools mypaintr rsvg rsvg unigd unigd |
|---|
| clp | Coin-or linear programming solver | coinor-libclp-dev
| pcaL1 |
|---|
| coinor-symphony | COIN-OR solver for mixed-integer linear programs | coinor-libsymphony-dev
| lpsymphony Rsymphony Rsymphony |
|---|
| curl | Easy-to-use client-side URL transfer library | libcurl4-openssl-dev
| alabaster.base arrow arrow bamsignals beachmat.hdf5 BigDataStatMeth chihaya cpp11bigwig cpp11bigwig csaw curl curl CytoML deepSNV DiffBind diffHic DropletUtils epialleleR epigraHMM FLAMES flowCore flowWorkspace gdscloud h5mread h5vc iscream jackalope jackalope maftools methylKit mitoClone2 mzR ncdfFlow ondisc ondisc otelsdk otelsdk podkat QuasR raer RCurl rhdf5 rhdf5 rhdf5 Rhtslib Rsamtools RSQLite RSQLite rtracklayer scPipe smer smer stPipe strawr strawr VariantAnnotation vcfppR vcfppR |
|---|
| cyrus-sasl2 | Cyrus SASL authentication abstraction library | libsasl2-dev
| mongolite mongolite |
|---|
| ffmpeg | FFmpeg library containing media filters | libavfilter-dev
| av av |
|---|
| fftw3 | Library for computing Fast Fourier Transforms | libfftw3-dev
| bioacoustics bioacoustics cartogramR diversitree diversitree fastlpr fftw fftwtools fftwtools hydrorecipes image.CannyEdges image.CannyEdges imager imager KSgeneral MFPCA MFPCA pliman pliman poisbinom poisbinom PoissonBinomial PoissonBinomial PoissonMultinomial qqconf qqconf ravetools ravetools RFIF RFIF Rssa Rssa spate spate SuperGauss SuperGauss |
|---|
| flint | C library for number theory | libflint-dev
| flint flint |
|---|
| fluidsynth | Real-time MIDI software synthesizer | libfluidsynth-dev
| fluidsynth fluidsynth |
|---|
| fontconfig | Generic font configuration library | libfontconfig-dev
| devEMF devEMF skiagd string2path string2path systemfonts systemfonts |
|---|
| fortran | Runtime library for GNU Fortran applications | | acepack apportion bain bain basicspace BayesFM bayesQR bayesQR BFpack BFpack BFpack bgw bsamGP BTSR caRamel caRamel catch causalSLSE cglasso clinfun clinfun clusterCrit clusterCrit clusterCrit coxphf coxphf coxphw coxphw crimCV cts DAISIE DAISIE dBlockmodeling DCCA Delaporte Delaporte deSolve deSolve dfsaneacc dglars DirStats DirStats DMMF DNAcopy dsdp dsdp dtrSurv DySS EcoNetGen EcoNetGen EpiILMCT eRm extremis FactorCopulaModel FAS FAS fastcox fastcox fastkqr frailtypack frontier frontier gcdnet gcdnet GeneSelectMMD geoBayes gglasso gglasso glasso glinvci glinvci gmm gmm growth growth grpnet gslnls gslnls HDtweedie hierNest hierNest Hmisc Hmisc iClusterPlus islasso islasso JLPM JLPM KERE kerndwd KFAS KFAS ktweedie ktweedie lbfgsb3c lbfgsb3c lcmm lcmm limSolve limSolve LMest localgauss longitree lorec LWFBrook90R LWFBrook90R mcr mcrPioda midasml midasml momentfit momentfit mpath mpath mpmi mpmi MSCMT MSCMT msda msda multimode multitaper multitaper MultNonParam Nmix NormPsy NormPsy npregfast npregfast npROCRegression npsp npsp NScluster numOSL NuPoP oc oc oscar oscar PEcAn.BASGRA popsom7 prefmod PropClust PRTree PWEALL qgg qgg r3PG r3PG RaschSampler RefBasedMI RefBasedMI restrend RGN RGN rms rms rmumps rmumps RobustAFT rrelaxiv rsae rsae rsofun rsofun RZooRoH SALES SALES SatRbedo seq2R seq2R sequoia sequoia sm SmoothHazard smwrQW sparsegl sparsegl sparsenet svd svd swdpwr SynExtend TensorClustering tmvtnorm tmvtnorm transfR TreeSim trend tseriesEntropy tseriesEntropy tseriesTARMA TSSS TULIP twdtw twdtw tweedie tweedie VCA vegan vegan WLreg wnominate wsbackfit |
|---|
| freetype | FreeType 2 font engine | libfreetype-dev
| Cairo Cairo devEMF devEMF gdtools gdtools gridmicrotex gridmicrotex ragg ragg rgl rgl showtext showtext skiagd sysfonts sysfonts systemfonts systemfonts textshaping textshaping xdvir |
|---|
| fribidi | Free Implementation of the Unicode BiDi algorithm | libfribidi-dev
| textshaping textshaping |
|---|
| gdal | Geospatial Data Abstraction Library | libgdal-dev
| gdalBindings gdalcubes gdalcubes gdalraster gdalraster ICESat2VegR lasR prepr rGEDIsimulator rlas rlas rlas sf sf terra terra vapour vapour |
|---|
| geos | Geometry engine for Geographic Information Systems | libgeos-dev
| apcf apcf exactextractr exactextractr lwgeom lwgeom sedonadb sf sf terra terra |
|---|
| glib | GLib library of C routines | libglib2.0-dev
| keyring keyring RcppCWB RcppCWB Rpoppler rsvg rsvg |
|---|
| glibc | GNU C Library: Shared libraries | libc6-dev
| GeoModels gslnls gslnls IAPWS95 IAPWS95 mongolite mongolite PEcAn.BASGRA pingr pingr r3PG r3PG robscale robscale rtorf SAPP SPECIES |
|---|
| glibmm | C++ wrapper for the GLib toolkit | libglibmm-2.4-dev
| HilbertVisGUI |
|---|
| glpk | Linear programming kit with integer (MIP) support | libglpk-dev
| igraph igraph leidenbase leidenbase rDEA rDEA Rglpk Rglpk sdcTable |
|---|
| gmp | Multiprecision arithmetic library | libgmp-dev
| arrangements arrangements corels corels flint flint FLSSS GeoFIS gmp hypergeo2 hypergeo2 prepr rcdd RcppAlgos RcppAlgos RcppBigIntAlgos RcppBigIntAlgos Rmpfr Rmpfr sbrl surveyvoi symengine TDA |
|---|
| gpgme | GPGME - GnuPG Made Easy | libgpgme-dev
| gpg |
|---|
| grpc | High performance general RPC framework | libgrpc++-dev
libgrpc-dev
| bigrquerystorage bigrquerystorage |
|---|
| gsl | GNU Scientific Library (GSL) | libgsl-dev
| abn abn AMOUNTAIN BayesChange BayesChange BayesVarSel BayesVarSel bbl BNSP catSurv catSurv CBN2Path ccfindR cit cit CLVTools CLVTools coga coga DirichletMultinomial diversitree diversitree dynr eaf eaf EHRmuse EHRmuse excursions excursions fingerPro fingerPro flan flan flowPeaks frailtyMMpen frailtyMMpen fRLR fRLR GeneralizedWendland GLAD GPBayes gsl gsl gslnls gslnls hgwrr hgwrr hSDM hSDM iBMQ immunoClust island jSDM jSDM landsepi LCMCR Libra libstable4u libstable4u lnmixsurv lnmixsurv markets mashr mashr mBvs mcrPioda minimaxALT minimaxALT mixcat mixture mmpca mmpca monoreg mvabund mvabund mvst PEPBVS PEPBVS psbcGroup QF rcontroll rcontroll rcontroll RcppDPR RcppGSL RcppGSL RcppZiggurat RcppZiggurat RDieHarder RDieHarder rGEDIsimulator ridge ridge RJMCMCNucleosomes Rlibeemd Rlibeemd rnetcarto rnetcarto Rsubbotools rtmpt rtmpt sbrl SecAct SemiCompRisks shrinkTVP SimInf SimInf smam smam spaMM stpphawkes stpphawkes survSNP SymTS topicmodels VBLPCM vol2birdR vol2birdR |
|---|
| gtk+ | GTK graphical user interface library - old version | libgtk2.0-dev
| HilbertVisGUI |
|---|
| gtkmm | C++ wrappers for GTK+ 2 | libgtkmm-2.4-dev
| HilbertVisGUI |
|---|
| harfbuzz | OpenType text shaping engine | libharfbuzz-dev
| Cairo Cairo textshaping textshaping |
|---|
| hdf5 | HDF5 C runtime files - serial version | libhdf5-dev
| BPCells BPCells hdf5r hdf5r RcppPlanc rGEDIsimulator vol2birdR vol2birdR |
|---|
| hiredis | Minimalistic C client library for Redis | libhiredis-dev
| heartbeatr RcppRedis RcppRedis redux redux |
|---|
| hwloc | Hierarchical view of the machine | libhwloc-dev
| RcppPlanc |
|---|
| icu | International Components for Unicode | libicu-dev
| Cairo Cairo stringi stringi |
|---|
| imagemagick | Low-level image manipulation library | libmagick++-6.q16-dev
libmagickcore-6.q16-dev
libmagickwand-6.q16-dev
| magick magick |
|---|
| jags | Just Another Gibbs Sampler for Bayesian MCMC | jags
| abn abn afthd aggreCAT aggreCAT agRee altmeta ArchaeoChron atacInferCnv auRoc autoMR autoMR BACCT bacistool baker baker bamdit baskoptr baskoptr basksim basksim baskwrap baskwrap BayesCACE bayescount bayescount BayesGWQS BayesianMediationA bayesmix BayesMoFo bayesMRM bayesmsm bayesmsm BayesPostEst BayesPostEst BayesRS BayesRS BayesTwin BayesTwin BayLum BayLum BCHM bdribs beaver beaver beer BEND BEND BeQut bfw bfw bhmbasket bhmbasket bipd bipd blrm bml bml bnma bnma boral bsam bsam bsam BTIME BTSPAS BTSPAS buzzMed buzzMed CNVrd2 CoDaLoMic COMBO COMBO cosimmr cosimmr crmPack crmPack crmPack crossnma crossnma dclone dclone dcmle dcmle DM dreamer dreamer dscoreMSM DTEAssurance EBASE EBASE EcoDiet EcoDiet eefAnalytics eoa3 epts ern eSIR ewoc ewoc ewoc EWOC.Comb gconsensus gemtc gemtc gemtcPlus glossa glossa groupWQS handwriter handwriter handwriterApp handwriterApp handwriterRF handwriterRF hbbr hdbma HiLDA historicalborrow IIVpredictor infercnv invitroTKstats invitroTKstats isoWater jagshelper jagshelper jagstargets jagstargets jagsUI jagsUI jarbes JMbayes JMbayes jmbr JointAI JointAI lcra lcra lira longit LoTTA MBNMAdose MBNMAdose MBNMAtime MBNMAtime mbpp mcmsupply mcmsupply mcp mcp metainsight midas2 midas2 miscF MisRepARMA missingHE missingHE MixSIAR MixSIAR morse morseDR MPTmultiverse MPTmultiverse msaeHB MVMR.CUE mvnma mvnma NAPrior NCC NCC neojags neojags nichetools nichetools NMADTA NobBS NobBS occumb occumb optimalThreshold ordinalbayes ordinalbayes ordinalRR pcnetmeta PEcAn.all PEcAn.assim.batch PEcAn.MA PEcAn.photosynthesis PEcAn.priors PEcAn.uncertainty PEcAn.workflow PEcAnAssimSequential PEcAnRTM pexm pexm phase1PRMD phase1PRMD phase1RMD phase1RMD phenoCDM pivmet pivmet popbayes popbayes PottsUtils prevalence prevalence psborrow psborrow PVAClone PVAClone R2jags R2jags rACMEMEEV rACMEMEEV RcmdrPlugin.RMTCJags remiod remiod reslr reslr rjags rnmamod rnmamod RoBMA RoBMA RoBSA RoBSA RobustBayesianCopas Romeb Romeb runjags S3VS saeHB saeHB.ME saeHB.ME.beta saeHB.ME.beta saeHB.panel saeHB.panel saeHB.panel.beta saeHB.panel.beta saeHB.spatial saeHB.spatial saeHB.twofold saeHB.twofold saeHB.unit saeHB.unit saeHB.ZIB SAME scDECO scDECO selectKSigs SeqFeatR serodynamics serodynamics sharx sharx SIBER SIBER simmr simmr snSMART snSMART sparsesurv sparsesurv ssifs SurviMChd TreeBUGS TreeBUGS UHM UHM unmconf zoib |
|---|
| jq | Lightweight and flexible command-line JSON processor | libjq-dev
| jqr jqr |
|---|
| json-c | JSON manipulation library | libjson-c-dev
| mypaintr |
|---|
| libarchive | Multi-format archive and compression library | libarchive-dev
| archive archive |
|---|
| libavif | Library for handling .avif files | libavif-dev
| avif |
|---|
| libdeflate | Fast, whole-buffer DEFLATE-based compression and decompression | libdeflate-dev
| GMMAT GMMAT MAGEE MAGEE pgenlibr vcfppR vcfppR |
|---|
| libffi | Foreign Function Interface library runtime | libffi-dev
| RSimpleFFI |
|---|
| libgit2 | Low-level Git library | libgit2-dev
| git2r git2r |
|---|
| libglu | Mesa OpenGL utility library | libglu1-mesa-dev
| lidRviewer rgl rgl |
|---|
| libglvnd | Vendor neutral GL dispatch library | libgl-dev
| lidRviewer rgl rgl |
|---|
| libjpeg-turbo | Libjpeg-turbo JPEG runtime library | libjpeg-turbo8-dev
| Cairo Cairo cpp11qpdf jpeg jpeg qpdf qpdf ragg ragg |
|---|
| libopenmpt | Module music library based on OpenMPT | libopenmpt-dev
| openmpt |
|---|
| libpng | PNG library | libpng-dev
| ggiraph ggiraph png png ragg ragg rgl rgl rvg rvg svglite svglite unigd unigd vdiffr vdiffr |
|---|
| librsvg | SAX-based renderer library for SVG files | librsvg2-dev
| rsvg rsvg |
|---|
| libsbml | System Biology Markup Language library | libsbml5-dev
| NetPathMiner rsbml |
|---|
| libsdl2 | Simple DirectMedia Layer | libsdl2-dev
| fluidsynth fluidsynth lidRviewer |
|---|
| libsecret | Secret store | libsecret-1-dev
| keyring keyring |
|---|
| libsigc++ | Type-safe Signal Framework for C++ | libsigc++-2.0-dev
| HilbertVisGUI |
|---|
| libsodium | Network communication | libsodium-dev
| sodium sodium |
|---|
| libssh | Tiny C SSH library | libssh-dev
| ssh ssh |
|---|
| libunwind | Library to determine the call-chain of a program | libunwind-dev
| winch winch |
|---|
| libuv1 | Asynchronous event notification library | libuv1-dev
| fs fs httpuv httpuv |
|---|
| libwebp | Lossy compression of digital photographic images | libwebp-dev
| ragg ragg webp webp |
|---|
| libx11 | X11 client-side library | libx11-dev
| Cairo Cairo imager imager rayrender rayrender rgl rgl tkrplot |
|---|
| libxcrypt | Libcrypt shared library | libcrypt-dev
| Rserve Rserve |
|---|
| libxml2 | GNOME XML library | libxml2-dev
| CytoML igraph igraph leidenbase leidenbase NetPathMiner XML xml2 xml2 xslt xslt |
|---|
| libxslt | XSLT 1.0 processing library | libxslt1-dev
| xslt xslt |
|---|
| libzstd | Fast lossless compression algorithm | libzstd-dev
| fstcore GMMAT GMMAT MAGEE MAGEE nanoarrow nanoarrow pgenlibr qs Rarr Rarr Rarr seqminer seqminer |
|---|
| lz4 | Fast LZ compression algorithm library | liblz4-dev
| fstcore qs |
|---|
| mbedtls | Lightweight crypto and SSL/TLS library | libmbedtls-dev
| nanonext nanonext nanonext |
|---|
| mecab | Libraries of Mecab | libmecab-dev
| RcppMeCab RcppMeCab RMeCab |
|---|
| mpfr4 | Multiple precision floating-point computation | libmpfr-dev
| flint flint GeoFIS hypergeo2 hypergeo2 multibridge multibridge Rmpfr Rmpfr rvMF rvMF scModels surveyvoi symengine |
|---|
| mysql | MySQL database client library | libmysqlclient-dev
| RMariaDB RMariaDB RMySQL RMySQL |
|---|
| netcdf | Interface for scientific data access to large binary data | libnetcdf-dev
| gdalcubes gdalcubes ncapi ncdf4 RNetCDF RNetCDF |
|---|
| ocl-icd | Generic OpenCL ICD Loader | ocl-icd-opencl-dev
| GeneralizedUmatrixGPU |
|---|
| onetbb | Parallelism library for C++ | libtbb-dev
| markets proxyC proxyC quanteda quanteda quanteda.textstats quanteda.textstats RcppParallel seededlda seededlda terra terra |
|---|
| openbabel | Chemical toolbox library | libopenbabel-dev
| ChemmineOB |
|---|
| openblas | Optimized BLAS | libopenblas0-pthread
| abclass abclass abctools abctools abn abn acc acebayes ACEt ACEt ACSSpack ACSSpack ActiveLearning4SPM actuar ADAPT adapt3 adapt3 adaptivetau adaptivetau adaptIVPT adaptIVPT ade4 ade4 ade4 adespatial adespatial adimpro adlift AdmixPoly admixtools ADMM ADMM affyPLM aftgee aftgee aftPenCDA aftPenCDA aftsem aftsem afttest afttest AGHmatrix ahaz aifeducation aifeducation aihuman aihuman AllelicSeries AllelicSeries alpaca alpaca AlphaSimR AlphaSimR Amelia AnalyzeFMRI anclik anMC anMC ANN2 ANN2 anominate aorsf aorsf ape ape apollo APRScenario APRScenario ARCensReg ARCensReg ARCokrig ARCokrig arfima arfima arkhaia arkhaia arrApply arrApply asmbPLS asmbPLS assist ast2ast aster ASV ATNr Avionic24 aws badp badp BalancedSampling BalancedSampling bama bamlss bamp bamp BANDITS bandle BAREB bark bark BAS BAS baseline baseline BASiCS basicspace baskexact baskexact BASSLINE batchmix batchmix Bayenet Bayenet BayesChange BayesChange bayesCureRateModel BayesDecon bayesDP bayesDP bayesefa bayesEO bayesEO BayesFM BayesianLasso BayesianLasso bayesianVARs bayesianVARs bayeslm bayeslm bayesm BayesMallows BayesMallows BayesMallowsSMC2 BayesPPD BayesPPDSurv bayesQR bayesQR bayesQRsurvey bayesQRsurvey BayesRegDTR BayesRegDTR Bayesrel BayesSpace BayesSUR BayesSUR BayesSUR bayesSurv BayesSurvive BayesSurvive bayestransmission bayesWatch bayesWatch baygel baygel bayMDS BCClong BCClong BCEE bcf bcf BCFM BCFM bcp bcp bcROCsurface bcROCsurface bcv bcv BDgraph bdrc bdrc bdsm bdsvd bdsvd beam beam BEKKs betaBayes betaregscale betaregscale beyondWhittle BFpack BFpack BGGM BGGM BGLR bgms bgms BGVAR BGVAR bhetGP bHIVE BHMSMAfMRI BHMSMAfMRI BHSBVAR BIDistances bife bife BIFIEsurvey BIFIEsurvey bigalgebra bigalgebra BigDataStatMeth bigergm bigGP bigGP bigKNN bigKNN bigPCAcpp bigPCAcpp bigPLScox bigPLScox bigPLSR bigPLSR bigReg bigReg bigsnpr bigsnpr bigstatsr bigstatsr bigtime bigtime BigVAR BigVAR binaryGP binspp binspp biosensors.usc biosensors.usc BKP blatent blatent Blend Blend bliss bliss BLMEngineInR BLMEngineInR blockmodels blockmodels blox blox BLPestimatoR blvim blvim bnlearn BNPmix BNPmix BoltzMM BoltzMM bonsaiforest bootCT bootUR bootUR bpgmm bpgmm bpnreg bpnreg bpr BPRMeth bpvars bpvars bqtl BradleyTerryScalable BranchGLM BranchGLM BRISC brmsmargins brmsmargins brnn bsamGP BSPBSS BSPBSS bspline bspline bssm bssm BSSprep BSTFA BSTFA bsvars bsvars bsvarSIGNs bsvarSIGNs BTLLasso BTSR BTtest BTtest Buddle BuyseTest BuyseTest bvars bvars bvarsv bvarsv bvartools bvartools CAESAR.Suite CAESAR.Suite capr capr capybara carat CARDspa carts catlearn catlearn causalSLSE causl ccaPP ccaPP cccp cccp ccImpute cda CDatanet CDatanet CEC CEC CelliD CellODE CellOracleR CellProgramMapper cellWise CERFIT CERFIT cglasso changepointGA changepointGA changepoints changepoints chngpt chngpt choicer choicer CholWishart CholWishart chomper chomper cinterpolate cinterpolate circlus circlus circumplex circumplex cIRT cIRT clarabel clarabel clubpro clubpro ClusPred clusterCrit clusterCrit clusterCrit clusterMI ClusterR ClusterR CLVTools CLVTools cmfilter cmfrec cmfrec CMGFM CMGFM COAP COAP coda.base coda.base coFAST coFAST colorednoise colorednoise combinIT combinIT combinIT COMIX COMMOTR complex complex compositions coneproj conleyreg conleyreg conos conos conquer conquer ContaminatedMixt coop coop copCAR coresynth coresynth corMLPE corMLPE cosimmr cosimmr Countr Countr covglasso CovTools CovTools CoxPlus CPE CPGLIB CPGLIB cplm cppSim cppSim cpr cpr cqrReg crandep crandep crawl crawl crimCV Crossover Crossover CSeQTL CSeQTL CspStandSegmentation CspStandSegmentation CspStandSegmentation ctmcd cTMed cTMed cts cts cvLM cvLM CWT CWT CytoML cytosignal CytoSimplex CytoSimplex dann dann darwin DatabionicSwarm DatabionicSwarm dateutils dateutils DCCA dcce dccmidas dccpp dccpp dcov dcurver dcurver deBif deBif deepgp deforestable deform deform DegNorm densEstBayes densityratio densityratio DepthProc DepthProc deseats deseats DESeq2 DESeq2 desla desla deSolve deSolve devianLM dexter dexter dfms dfms dfphase1 dglars DGP4LCF DGP4LCF diagis diagis DifferentialRegulation DIFM dina dina distinct diversitree diversitree dlm dmbc dmbc dMrs DoseFinding DoseFinding DOVE dpcid DR.SC DR.SC drclust dream dream drgee drgee DRIP DRIP drrglm drrglm dsdp dsdp DstarM DstarM DSWE DSWE dti dtwclust dtwclust DyadiCarma DyadiCarma dynaTree dynmix dynmix DySS Eagle earth earthtide ebdbNet ebdbNet EBEN eBsc eBsc ebTobit ebTobit echoice2 echoice2 echos echos eco eco ecod025ps1 ecodist ecodist economiccomplexity edgeR edina edina eDMA eegUtils EFAfactors EFAtools EFAtools eFCM eha eimpute ELAplus elmNNRcpp elmNNRcpp emBayes EMCluster EMCluster EMgaussian EMgaussian emIRT emIRT EMMIXgene empichar empichar endorse endorse energymethod epicR epicR epigraHMM EpiLPS EpiLPS epistasisGA equateMultiple EquiTrends EquiTrends ergmito ergmito errum errum esaddle esaddle esemifar esreg esreg etm etm evgam evgam evinf evinf evolqg evolqg exdqlm exdqlm ExhaustiveSearch ExhaustiveSearch experiment experiment expm expm expQ2 ExtremalDep ExtremalDep exuber exuber fable.intermittent fabMix factorstochvol factorstochvol fad fad fanc fastadi fastadi FastBandChol fastcpd fastcpd fastei fastei fastGHQuad fastGHQuad fastGLCM fastGLCM fastglmpca fastglmpca fasthurdle fastICA fastkqr FastKRR FastKRR fastliu fastM fastmatrix fastPLS fastTopics fastTopics FBFsearch fChange fChange fclust fdacluster fdacluster fdaMixed fdaMixed fdaSP fdasrvf fdasrvf fdesigns fDMA fDMA fect fect fEGarch FGLMtrunc fICA fields fields filling filling FIRM fixes fixes FKF FKF FKF.SP FKF.SP flexBART flexBART flexBCF flexBCF FlexVarJM FlexVarJM float float FLORAL FLORAL flowCore FLOWMR flowWorkspace fmri fmriAR fmriAR fmrigds fmrihrf fmrihrf fmrilss fmrireg forecast forecast fourierin fourierin fracdiff fracdiff FRASER FRESA.CAD funcharts funcharts funMoDisco FusioMR FuzzySimRes FuzzySimRes fwildclusterboot GADAG gam gamsel gamselBayes gaselect gaselect gasper gasper GauPro GauPro gcKrig gclm gclm GCPBayes GCSM GCSM GDINA GDINA gdpc gdpc gee GEEaSPU geigen geiger geiger GEMSS GenSA geoBayes geocmeans geocmeans geocomplexity geocomplexity GeoDiff geommc geommc GeoModels GeoModels geostatsp GFM GFM GGMncv GGMncv GGPA ggsc gicf gigg gigg gjam gkwdist gkwdist Glarmadillo glcm glcm GLCMTextures GLCMTextures glinvci glinvci GLMaSPU GLMaSPU glmbayes glmbayes glmbayesCore glmGamPoi glmm glmmEP glmmML glmmsel glmmsel glmSTARMA glmSTARMA GMCM GMCM gmm gmm GMMAT GMMAT gmtFD gmvjoint gmvjoint gmwmx2 gmwmx2 gMWT gMWT gnm gnm gofar gofar GOFclustering goffda goffda GPCMlasso gpcp gpcp GPFDA GpGp GpGp gps gps gpss gpss GPTCM GPTCM GPvam GPvecchia GRAB GRAB graper graphicalEvidence graphicalVAR grasps grasps gRbase gRbase greed greed GreedyEPL GRENITS gridOT gRim gRim grove grpsel grpsel GSE gss gstat gstat GWASBrewer GWASinlps GWASinlps GWmodel hann hann harmony harmony hawkes HDANOVA HDANOVA hdbcp hdbcp hdflex hdflex hdnom hdnom HDNRA HDNRA hdpGLM hdpGLM HDSpatialScan HDTD HDTSA HDTSA HDtweedie hgm hgwrr hgwrr hhdynamics hhdynamics hibayes hibayes HiDimDA HiGarrote highfrequency highfrequency HiSpaR HistDAWass HistDAWass hitandrun hitandrun hkevp hkevp HLMdiag HLMdiag hmcdm hmcdm hpa HSAR HSAR hsphase HTLR HTLR huge huge hydrorecipes hypervolume hypervolume iapws iAR ibr iccbeta iccbeta iClusterPlus iClusterVB iClusterVB ICSClust ICSClust ICtest ICtest idefix idefix iDOVE ieTest iglm iglm igraph igraph inca INLAspacetime INLAspacetime interep intkrige intkrige intrinsicFRP intrinsicFRP intsurv intsurv ipfp ipfp irlba irlba IRTM islasso islasso ivdoctr ivdoctr ivx ivx jackalope jackalope JANE JANE JFM JMbayes JMbayes JMbayes2 JMbayes2 jmcm jmcm joineRML joineRML jointDiag jointDiag jrSiCKLSNMF jrSiCKLSNMF jSDM jSDM kalmanfilter kazaam kdecopula kdecopula kerndwd KernelKnn KernelKnn kernlab kernR KernSmooth KFAS KFAS kimfilter KMT KMT KODAMA KODAMA krige ksm ksm kyotil kyotil l0ara L0Learn L0Learn l1spectral LA laGP lakhesis lakhesis LAM LAM LaMa LaMa lamle Langevin LangevinFlow LangevinFlow LassoHiDFastGibbs LassoHiDFastGibbs latentnet latentnet lavacreg lavacreg lavaSearch2 lavaSearch2 LCPA lddmm ldsep ldsep ldt LEA lefko3 lefko3 legion legion leidenbase leidenbase lemur lemur leontief leptokurticMixture lessSEM lessSEM lfa lfe lgspline lgspline libcoin libcoin lidR lidR lidR LikertMakeR LikertMakeR limSolve limSolve linelistBayes linelistBayes list list lit lit ljr lm.br LMest lmmprobe lmmprobe Lmoments lmSubsets lmSubsets lnmixsurv lnmixsurv localgauss LOCOM2 LogConcDEAD logconcens logcumulant logcumulant logistf logistf logspline longclust lorec lotri lotri lowmemtkmeans lowmemtkmeans lowpassFilter LowRankQP lpirfs lpirfs lpSolveAPI lpSolveAPI lqmm lsirm12pl lsReg ltsk ludic ludic luna MABOUST MADMMplasso MADMMplasso MAGEE MAGEE magi MAGICR magree MAINT.Data malan malan manifold ManifoldOptim ManlyMix maotai maotai maptpx maptpx marble marble MarginalMaxTest MarginalMaxTest markerpen markerpen markophylo markovchain markovchain masc masc mashr mashr mastif MAT matchingMarkets matchingMarkets Matrix Matrix matrixCorr matrixCorr MatrixCorrelation MatrixCorrelation matrixdist matrixdist MatrixExtra MatrixExtra MatTransMix MAVE mbkmeans mboost mboost mccca mcemGLM mclust MCMCprecision MCMCprecision mcmcse mcmcse MDCcure MDCcure mdgc mdgc mdmb mdmb MDP2 MDP2 MendelianRandomization MendelianRandomization MESS MESS metafolio metafolio MetaHD metaRange metaRange mets mets mev mev MFSD mgcv mgcv MGMM MGMM mgwrsar mhpfilter mhpfilter miceadds miceadds miceFast miceFast microsimulation microsimulation mig mig miloR milr milr minimaxALT minimaxALT minimaxApprox minimaxApprox miniPCH miniPCH minpack.lm mirt mirt mirtCAT mirtCAT MiSPU MiSPU MissCP missoNet missoNet mixAK mixedBayes mixedBayes mixedCCA mixedCCA mixedClust mixedMem mixedMem MixMatrix MixMatrix MixSim MixSim mixsqp mixsqp mixture MLEcens mlegp mlegp mlpack mlrv mlstm mlstm MMGFM MMGFM mmsample MNARclust mnorm MNP MNP modeLLtest modeLLtest modelSelection modelSelection modsem modsem mombf mombf momentfit momentfit momentuHMM momentuHMM MomTrunc MomTrunc monomvn Morpho Morpho moveHMM moveHMM moveMMPP mp mp mpath mpath MR.Corr2 MR.CUE MR.LDP mr.mashr mr.mashr MR.RGM MR.RGM MRAID mrfDepth mrgsolve mrgsolve MRPATH MSCMT MSCMT MSGARCH msgps MSIMST MSIMST msm MSstats MSTest MSTest MTLR MTLR multAbund multbxxc MultiCOAP MultiCOAP multilevLCA multilink multilink multinomineq multinomineq multipleOutcomes multipleOutcomes MultiRFM MultiRFM MultiscaleDTM MultiscaleDTM multitaper multitaper multivar MultNonParam MultOrdRS MultOrdRS MultSurvTests MultSurvTests mutualinf mutualinf mvgam mvgam mvMAPIT mvMAPIT mvMORPH mvMORPH MVMR.CUE MVMRcML mvnfast mvnfast mvtnorm mvtnorm n1qn1 n1qn1 NAM NAM navigation navigation navigation netClust netdiffuseR netdiffuseR NetMix NetMix NetPathMiner netrankr netrankr NetRep NetRep NetworkChange NetworkChange NetworkDistance NetworkDistance nevada nevada ngme2 ngme2 ngspatial nimble nimble nleqslv nleqslv nlmixr2est nlmixr2est nlmixr2extra nlmixr2extra nlmm nlmm NLPwavelet NLPwavelet nlsur nmathopencl nonlinearTseries nonlinearTseries nonneg.cg nonneg.cg nonprobsvy nonprobsvy np np NPCirc NPflow NPflow npRmpi npsp npsp o2plsda o2plsda oc oc oeli oeli oem oem ohoegdm ohoegdm onlineforecast onlinePCA OpenImageR OpenImageR OPSR OPSR optmatch optmatch ordinalClust orthoDr orthoDr OSFD OutcomeWeights OutcomeWeights OUTRIDER pacotest pacotest PAGFL PAGFL pagoda2 pagoda2 pairscale pairscale parallelDist parallelDist parglm parglm pARI pARI parma parma PartialNetwork PartialNetwork partition partition party party party pcaL1 pcalg pcalg pcaone pcaPP pcaPP PCMBaseCpp PCMBaseCpp PCMRS pda pdSpecEst pdSpecEst pecora pECV pegs penAFT penAFT penalized PenCoxFrail pense pense pEPA pEPA PEPBVS PEPBVS PESTO pgee.mixed pgee.mixed pgKDEsphere pgmm phangorn phangorn phangorn PhaseType PhaseType phenofit phenofit PHSMM PhylogeneticEM PhylogeneticEM phylosignal phylosignal phyr phyr PhysioExperiment picreg picreg PINSPlus PJFM pjrt planar PLFD PLFD plgp pliman pliman PLNmodels PLNmodels plsRglm plsRglm pmartR pmartR poismf poismf poLCAParallel poLCAParallel polspline polyapost polykde polykde POMaSPU pomp pomp popPCR popPCR porridge PPCI PPforest PPforest ppgmmga ppgmmga PPMR PPMR pprof pprof PPSFS PPSFS PPtreeExt PPtreeExt pqrBayes pqrBayes PRDA PRDA PRECAST preprocessCore PRIMME PRIMME probe probe ProFAST ProFAST ProfileGLMM ProfileGLMM profoc profoc projpred projpred pRoloc prospectr prospectr prototest proxyC proxyC PRTree psbcSpeedUp psbcSpeedUp psd psd pseudoCure pseudoCure PSGD PSGD psgp psp psp PSPI PSPI psqn psqn psychonetrics psychonetrics pumBayes pumBayes puniform puniform pyinit pyinit qbld qch qcluster qfa qgg qgg qif qif qpgraph QR qtl qtl qtlpoly QTLRel quadprog quadrupen quadrupen quanteda.textmodels quanteda.textmodels QuantilePeer QuantilePeer quantreg QuantRegGLasso QuantRegGLasso QZ QZ Racmacs Racmacs rags2ridges rags2ridges ramcmc ramcmc RandomForestsGLS randompack rare rare ratematrix ratematrix rCausalMGM RcppArmadillo RcppArmadillo RcppBlaze RcppBlaze RcppCensSpatial RcppDist RcppDist RcppDPR RcppEigen RcppEigen RcppEnsmallen RcppEnsmallen RcppHMM RcppKalman rcppmlpackexamples rcppmlpackexamples RcppPlanc RcppSMC RcppSMC Rcsdp Rdimtools Rdimtools rdist rdist ReAD RealVAMS recometrics recometrics redist redist redistmetrics redistmetrics rEDM registr registr regmed regmhmm regmhmm regnet regnet regsem regsem relliptical relliptical relsurv remstimate remstimate rENA repolr reReg reReg resemble resemble reservr reservr resourcecode resourcecode revdbayes revdbayes revealedPrefs rexpokit rexpokit Rfast Rfast Rfast2 Rfast2 Rforestry Rforestry ribiosMath ribiosMath ridgeBART ridgeBART ridgetorus ridgetorus Riemann Riemann RiemBase RiemBase riskRegression riskRegression rlibkriging rlibkriging rliger rliger Rlinsolve Rlinsolve RLT RLumModel RLumModel rmarchingcubes rmarchingcubes RMCLab RMCLab RMFM RMFM rmgarch rmgarch Rmlx Rmodule RMR.ICP RMSS RMSS rmumps rmumps rMVP rMVP Rnanoflann RNOmni RNOmni roben roben roboBayes robregcc robregcc RobStatTM RobStatTM robsurvey robsurvey robust robust robustarima robustarima robustbase robustbase robustHD robustHD robustlmm robustlmm robustmatrix rofanova rofanova ROI.plugin.qpoases ROKET roll roll rolleigen rolloptim rollshap rollshap roptim roptim rotations rotations rpeaks Rphylopars Rphylopars rpm rpm rpms rpql RprobitB RprobitB rr rrcov rrcov RRI rrMixture rrpack rrum rrum rsae rsae Rsolnp Rsolnp rsparse rsparse RSpectra RSpectra rSpectral rSpectral RSSL RSSL RStoolbox RStoolbox rstpm2 rstpm2 RSTr RSTr rsvddpd rsvddpd rTLS rTLS RTMB RTMB RTMBp rtrend rtrend Rtsne Rtsne RuHere RuHere rupturesRcpp rupturesRcpp rust rust rwig rwig RWNN RWNN rxode2 rxode2 s2net s2net saeMSPE saeRobust saeRobust SAGMM SAGMM SAIGEgds SAMGEP SAMGEP samplr samplr sanba sanba SANvi SANvi sarima sarima sbivar SBmedian SBmedian sbmSDP SBMTrees SBMTrees SC3 scalablebayesm ScatterDensity ScatterDensity scClustEval scde SCENT scGPS scINSIGHT scINSIGHT scmap scMitoMut scoringRules scoringRules SCORPION scPharm scran scrapper scs scs scTenifoldNet sctransform scuttle scVeloR sdetorus sdetorus sdsfun sdsfun secrdesign secrdesign seine SelectBoost.gamlss SelectBoost.gamlss sem semidist semidist sentometrics sentometrics sentopics sentopics seqHMM seqHMM seroreconstruct seroreconstruct sfcr sfcr sgd sgd sgdGMF sgdGMF SGDinference SGDinference sglasso sgolay sgolay sgs sgs shapr shapr shard shard ShrinkCovMat ShrinkCovMat shrinkDSM shrinkem shrinkTVP shrinkTVPVAR SHT SHT Sieve sievePH sievePH SiFINeT signeR SimBIID SimBIID simcdm simcdm SimJoint SIMLR simmr simmr simStateSpace simStateSpace SimTOST SimTOST simts simts singR sirt sirt sits sits slalom slam slcm slcm sleev sleev slfm slideimp SLmetrics smaa smaa SMASH smmR smmR smooth smooth smoothemplik smoothemplik smoots smriti smriti smurf SNPRelate snpsettest snpsettest SoftBart sommer sommer sorcering sox spAbundance spAbundance SpaCCI SpaceTimeBSS SpaCOAP SpaCOAP SpaGER spam spam64 spanner spanner spanner sparseDFM sparsediff sparsediff SparseICA SparseICA sparsereg sparseSEM sparsevb sparsevb sparseVCBART sparseVCBART SpatialBSS SpatialExtremes SpatialExtremes SpatialInference SpatialInference spatialreg spatialreg SpatialTools SpatialTools SpatMCA SpatMCA SpaTopic SpaTopic SpatPCA SpatPCA spBayes spBayes spBayesSurv spBPS spBPS spc spCP spCP spcr specs spEDM spEDM spexvb spexvb spfa spFFBS spFFBS sphunif sphunif SpiecEasi spikeSlabGAM spikeSlabGAM spinBayes spinBayes splikit splikit splines2 splines2 splmm spMC spMC spnn spnn spNNGP spNNGP spOccupancy spOccupancy springer springer spStack spStack srm srm ssgraph Sshaped ssMRCD SSOSVM SSOSVM sstvars sstvars STAREG starma starma statespacer statespacer statgenGWAS statgenGWAS statgenQTLxT StatRec stcos stcos StealLikeBayes StealLikeBayes StempCens stepR stepSplitReg stepSplitReg stm stm stochcorr stochQN stochvol stochvol stpphawkes stpphawkes stratEst stratEst StratifiedSampling StratifiedSampling STRIDER strucchangeRcpp strucchangeRcpp sts StuteTest subplex subplex subsampling subsampling subselect SubTite supclust supclust SuperpixelImageSegmentation SuperpixelImageSegmentation SurrogateParadoxTest SurrogateRegression SurrogateRegression surtvep surtvep survAUC survAUC SurvivalClusteringTree survkl survkl susieR svars svars svd svd SVG SVG SVP svytest svytest switchSelection swjm swjm symMCD symmetry symphony symphony synMicrodata T4cluster T4cluster T4transport T4transport tabularMLC tabularMLC TAG tagtools tagtools TAM TAM TapeS TapeS targeted targeted TauStar TauStar TCIU tclust tclust tcv TDAkit TDAkit TDAvec TDAvec tEDM tEDM tensorBSS TestDesign TestDesign tetrascatt tetrascatt textTinyR textTinyR tfarima tfarima tgp tgstat tgstat tidynorm tidynorm tidypopgen tidypopgen timereg timereg tlars tlars tlrmvnmvt tma TMB TMB tmvtnorm tmvtnorm tmvtnsim TPmsm TPmsm trajeR trajeR trc TreeBUGS TreeBUGS treeclim treeclim treestats treestats TruncatedNormal TruncatedNormal truncProxy truncProxy trunmnt tsBSS tseries tseriesTARMA TSLA tsmarch tsmarch tsPI tsPI tvR tvR twinsvm ubms ubms ucminf ucminf UComp unmarked unmarked unmarked Uno Uno UPCM updog updog varband varband VARSELECTEXPOSURE VarSelLCM VarSelLCM VARtests VCA VCBART VCBART vcpen vcrpart vcrpart VeccTMVN VeccTMVN VectorForgeML VectorForgeML vegan vegan VEwaningVariant visPedigree visPedigree VMDecomp VMDecomp vMF vMF vntrs vntrs volesti walk walker walker wARMASVp wARMASVp waspr waspr waterlevel watson watson WaveSampling WaveSampling wbacon wbacon wCorr wCorr wdnet wdnet WeibullR WeibullR weibulltools weibulltools WH WH winsorize womblR womblR WRI wv wv XDNUTS yuima yuima zic zoomerGP ZVCV ZVCV |
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| opencv | Computer vision Feature Detection and Descriptor Extraction library | libopencv-shape-dev
libopencv-objdetect-dev
libopencv-calib3d-dev
libopencv-photo-dev
libopencv-highgui-dev
libopencv-videoio-dev
libopencv-video-dev
libopencv-imgcodecs-dev
libopencv-features2d-dev
libopencv-imgproc-dev
libopencv-flann-dev
libopencv-core-dev
libopencv-contrib-dev
| aznyan opencv opencv opencv rip.opencv rip.opencv VoltRon VoltRon |
|---|
| openjdk | OpenJDK Java runtime, using Hotspot JIT | openjdk-21-jre-headless
| Achilles AgroTech alabaster.sfe AntAngioCOOL AQEval AQEval AQLTools arulesNBMiner arulesNBMiner aslib aslib Avionic24 AWR AWR AWR.Kinesis AWR.Kinesis babette babette bartMachine bartMachine bartMachineJARs bartMan bartXViz bartXViz BASiNET BayesianFitForecast beastier beastier BeastJar BeastJar blendR blendR bmggum bmggum bnpa boilerpipeR boilerpipeR BridgeDbR CBSr CBSr ccpsyc Characterization Characterization ChoR CHRONOS CirceR CirceR CohortGenerator CohortGenerator CohortMethod CohortMethod CommonDataModel comunicacion ConvertPar ConvertPar corehunter coreNLP Crossover Crossover d4t4tur DaMiRseq DatabaseConnector DatabaseConnector DatabaseConnectorJars DatabaseConnectorJars DataClean DataClean DataLoader DataQualityDashboard DataQualityDashboard DecorateR DecorateR Deducer DeepPINCS denguedatahub denguedatahub dialr dialr dialrjars dialrjars DIETCOST DIETCOST DIscBIO DIscBIO disclosuR disclosuR DIZutils DIZutils DQAgui DQAgui DQAstats DQAstats drawsample drawsample dsa ELT enmSdmX enmSdmX eprscope esATAC Eunomia Eunomia EvidenceSynthesis EvidenceSynthesis evoper evoper fastreeR FastRet FastRet FeatureExtraction FeatureExtraction fioRa fioRa FishEconProdOutput fsdaR fsdaR FSelector FSelector GARS GenProSeq geogenr geogenr ggdemetra ggdemetra ggdemetra3 GGUM GGUM glmulti gMCP gMCP GreedyExperimentalDesign GreedyExperimentalDesign GreedyExperimentalDesignJARs GTbasedIM helloJavaWorld hive html2pdfr InflectSSP informativeSCI informativeSCI InSilicoVA InSilicoVA intamapInteractive InterfaceqPCR InterpretMSSpectrum InterpretMSSpectrum iplots islify ISM JATSdecoder JATSdecoder JavaGD JavaGD JGR jNSMR joinXL joinXL jplantuml4r lilikoi LipinskiFilters llama LLM loa loa MadanText MadanText MadanText MadanTextNetwork MadanTextNetwork MadanTextNetwork mailR mailR mallet mallet massSpectrometryR matchingMarkets matchingMarkets mauricer mauricer mcbette mcbette metabinR MetabolomicsBasics MetabolomicsBasics miRSM mMARCH.AC mMARCH.AC moodef moodef MorbiditySpainR MS2Quant MultiGroupSequential mutossGUI mwa mwa NicheBarcoding NicheBarcoding NicheBarcoding NLPutils nodeSub nodeSub odkr OdysseusCharacterizationModule OdysseusPathwayModule OdysseusSurvivalModule OhdsiReportGenerator OhdsiReportGenerator OhdsiShinyAppBuilder oii openNLP openNLPdata OpenStreetMap OpenStreetMap openVA openVA OptimalRerandExpDesigns OptimalRerandExpDesigns OSMscale OSMscale OSTA PatientLevelPrediction PatientLevelPrediction patRoon pems.utils pems.utils pguIMP pguIMP postGGIR postGGIR pubchem.bio publishTC qCBA qCBA qdap qdap r5r r5r r5rgui r5rgui rapidraker rapidraker RBioFormats rCBA rCBA rcdk rcdk rcdklibs rcdklibs rChoiceDialogs Rcurvep Rcurvep Relectoral REPPlab REPPlab REPPlabShiny restoptr restoptr ResultModelManager ResultModelManager rexer rexer rflsgen rflsgen rgph rGroovy RH2 RH2 rJava rjd3bench rjd3bench rjd3filters rjd3highfreq rjd3jars rjd3jars rjd3nowcasting rjd3production rjd3production rjd3production rjd3providers rjd3providers rjd3revisions rjd3stl rjd3sts rjd3toolkit rjd3toolkit rjd3tramoseats rjd3tramoseats rjd3workspace rjd3workspace rjd3x11plus rjd3x13 rjd3x13 rjd3xjars rjd3xjars RJDBC RJDBC RJDemetra RJDemetra rjdmarkdown rjdmarkdown rjdqa rjdqa rjdworkspace rjdworkspace RJSDMX RJSDMX rkafkajars RKEA RKEAjars RMassBank rmcfs rmelting RMOA RMOAjars RNetLogo RNetLogo rolap rolap rOmniDriver roogledocs rQSAR rRDP rrepast rrepast RSCAT RSentiment RSP rsubgroup rviewgraph RWeka RWekajars RxnSim RxnSim sae.projection sarks SAvalidation scagnostics scagnostics scider SELEX SelfControlledCaseSeries SelfControlledCaseSeries SelfControlledCohort SelfControlledCohort SensMap SensMap shelltrace shelltrace simplace simplace simplaceUtil sjdbc slowraker slowraker SpatialOmicsOverlay spcosa SQLove SQLove SqlRender SqlRender staplr staplr stops stops streamMOA streamMOA surveycto survHE survHE survHEhmc survHEinla swipeR swipeR tableParser tableParser tabulapdf tabulapdf testRapi tpfp tssim tvCoef vacalibration vacalibration VAExprs venneuler venneuler wallace wallace warmthcompetence warmthcompetence WhatsR WhatsR when when wordnet XLConnect XLConnect xlsx xlsx xlsxjars xlsxjars |
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| openjpeg2 | JPEG 2000 image compression/decompression library | libopenjp2-7-dev
| divest divest |
|---|
| openmp | GCC OpenMP (GOMP) support library | | abclass abclass abess abn abn acebayes ACSSpack ACSSpack ActiveLearning4SPM adaptIVPT adaptIVPT adelie adelie adimpro adjclust adjclust admisc admisc AdmixPoly admixtools ADMM ADMM Aerith aftsem aftsem AGHmatrix aifeducation aifeducation aihuman aihuman alcyon AllelicSeries AllelicSeries AlphaSimR AlphaSimR AMISforInfectiousDiseases AMISforInfectiousDiseases ANN2 ANN2 aorsf aorsf Apoderoides Apoderoides apollo ARCensReg ARCensReg ARCokrig ARCokrig arkhaia arkhaia asmbPLS asmbPLS ASV atakrig ATNr audio.whisper autoFRK aws awsMethods balnet banditpam bandle BAREB BART bartcs bartcs BASiCS batchmix Bayenet Bayenet BayesChange BayesChange BayesDecon bayesefa bayesEO bayesEO BayesMallows BayesMallows BayesMallowsSMC2 bayesPO bayesPO BayesPPD BayesRegDTR BayesRegDTR BayesSpace BayesSUR BayesSUR BayesSUR BayesSurvive BayesSurvive baygel baygel bayNorm BCClong BCClong BCEE BDgraph bdrc bdrc BEKKs BET betaregscale betaregscale BGData BGData bhetGP BHMSMAfMRI BHMSMAfMRI BHSBVAR BigDataStatMeth bigergm biglasso biglasso BigQuic bigsnpr bigsnpr bigstatsr bigstatsr binspp binspp biosensors.usc biosensors.usc BKP blatent blatent Blend Blend blvim blvim BNPmix BNPmix bonsaiforest bpnreg bpnreg bpr bpvars bpvars BradleyTerryScalable BranchGLM BranchGLM brif BRISC brmsmargins brmsmargins brnn bssm bssm bsvars bsvarSIGNs bsvarSIGNs BTtest BTtest Buddle BUSseq bvars bvars bvhar bvhar CAESAR.Suite capybara carat CARDspa cartogramR CausalGPS CausalGPS causl CautiousLearning cayleyR cayleyR ccImpute CDatanet CDatanet celda CelliD CellODE CellOracleR CellProgramMapper cellWise CFC cheapr cheapr choicer choicer chouca circlus circlus circtree circumplex circumplex cIRT cIRT clubpro clubpro ClusterR ClusterR CLVTools CLVTools cmfilter cmfrec cmfrec CMGFM CMGFM COAP COAP collapse collapse Colossus Colossus combinIT combinIT combinIT COMIX COMMOTR conleyreg conleyreg conos conos conquer conquer coop coop cophescan cophescan copre copre CORElearn coresynth coresynth corMLPE corMLPE cosimmr cosimmr CoSMoS CoSMoS countdata CPGLIB CPGLIB cppSim cppSim craftgrn craftgrn crctStepdown crqa crqa csdR CSeQTL CSeQTL CspStandSegmentation CspStandSegmentation CspStandSegmentation ctl ctmcd cTMed cTMed CVXR CVXR CWT CWT daedalus dann dann data.table dccpp dccpp dcurver dcurver DDRTree2 deadwood deadwood DECIPHER deepgp defm defm deform deform DegNorm Delaporte Delaporte DeMixT densityratio densityratio densvis DepthProc DepthProc deseats deseats desla desla devianLM dexter dexter dfmta DIFM dipm DirichletRF DirichletRF dlmtree dlmtree dmbc dmbc dMrs DNABarcodes dnn dotCall64 DOVE drclust dream dream dress.graph dress.graph dsem dsem dust dust2 dynsbm e2tree e2tree Eagle Eagle ebTobit ebTobit echoice2 echoice2 echos echos ecod025ps1 economiccomplexity eDMA eegUtils EFAfactors EFAtools EFAtools eFCM ELAplus elfDistr elfDistr elgbd elgbd elmNNRcpp elmNNRcpp emBayes emcAdr emIRT emIRT empichar empichar energymethod epigraHMM epigrowthfit epigrowthfit EpiLPS EpiLPS epiworldR epiworldR ergmito ergmito errum errum ETAS ETAS evgam evinf evinf excursions excursions exdqlm exdqlm expQ2 expSBM fabMix fanc fastadi fastadi fastcpd fastcpd fastGLCM fastGLCM FastHamming fastJT FastKRR FastKRR fastLink fastLink fastliu fastlpr fastplyr fastpos fastpos fChange fChange fdacluster fdacluster fdaSP fdasrvf fdasrvf fdesigns fDMA fDMA FDOTT fedmatch fEGarch FENmlm FGLMtrunc fHMM fHMM fido fido filling filling fixest fixest flexBART flexCountReg flexCountReg float float FLORAL FLORAL FLOWMR flownet flownet fmrigds fmrihrf fmrihrf fmrilatent fmrilss fmrireg fpROC fpROC frailtypack FRESA.CAD fRLR fRLR fstcore funcharts funcharts funMoDisco fwildclusterboot GauPro GauPro gbm3 gbm3 GCSM GCSM gedi2 gedi2 GeneScape genie genie geocmeans geocmeans geocomplexity geocomplexity GeoDiff geommc geommc ggmlR ggmlR ggsc gjam gkwdist gkwdist glinternet glinvci glinvci gllvm gllvm GLMaSPU glmmrOptim glmmrOptim glmmTMB glmmTMB glmmTMB gmGeostats gmvjoint gmvjoint goat goat goftte gower gower GPBayes gpboost GPCMlasso GPFDA GpGp GpGp GPTCM GPTCM GPvecchia graphicalEvidence grasps grasps grattan grattan grattanInflators grattanInflators gravmagsubs greed greed gridOT groupedSurv GWmodel hann hann hashr hashr hawkesbow hawkesbow hdbcp hdbcp HDclust hdflex hdflex HDNRA HDNRA hdpGLM HDTD healthyAddress healthyAddress hgwrr hgwrr hibayes hibayes highfrequency highfrequency HistDAWass HistDAWass hkevp hkevp hmcdm hmcdm hrt HRTnomaly HRTnomaly HSAR hsphase HTLR HTLR huge huge hutilscpp hutilscpp iAR iBMQ ICEbox ICEbox iClusterVB iClusterVB icr icr icsp2 idefix idefix iDOVE ieTest iglm iglm image.CornerDetectionHarris image.CornerDetectionHarris image.libfacedetection image.libfacedetection imager imager immApex influenceR influenceR infomap interep intRinsic intRinsic intrinsicFRP intrinsicFRP intsurv intsurv invgamstochvol ipsecr ipsecr iq iq IRanges IRanges irls IRTM iscream ISoLDE isotree isotree JANE JANE JMbayes JMbayes JMbayes2 JMbayes2 jmcm jmcm joineRML joineRML jrSiCKLSNMF jrSiCKLSNMF kalmanfilter kendallknight KernelKnn KernelKnn kimfilter kissmig kit kit kmBlock KMT KMT KMT kohonen ksm ksm LA laGP lamle Langevin lasR lavacreg lavacreg LCPA lddmm ldsep ldsep ldt learner learner leontief lessSEM lessSEM lfl lfl lidR lidR lidR lidRalignment lightgbm lit lit llamaR llamaR lmmprobe lmmprobe Lmoments LOCOM2 lotri lotri lowmemtkmeans lowmemtkmeans LPStimeSeries lsirm12pl lsReg ludic ludic MABOUST MADMMplasso MADMMplasso maotai maotai marble marble MarginalMaxTest MarginalMaxTest markerpen markerpen mashr mashr matchingMarkets matchingMarkets MatchIt MatchIt matrixCorr matrixCorr matrixdist matrixdist MatrixExtra MatrixExtra mccca MDCcure MDCcure MDFS mdgc mdgc meanr meanr meanShiftR meanShiftR melt melt methFuse methFuse methimpute mev mev MFSD mgcv mgcv mgsa mgwrsar miceFast miceFast mig mig miic miic miloR minimaxALT minimaxALT miniPCH miniPCH miRNAss mirt mirt missoNet missoNet mixedBayes mixedBayes mixgb mixgb MixMatrix MixMatrix mixture mlpack mlrv mlstm mlstm mmand mmand mmcm mmcm MMGFM MMGFM mmpca mmpca mnorm modelSelection modelSelection modsem modsem moire mombf MonotonicityTest MonotonicityTest Morpho Morpho motifcounter moveMMPP mpmi mpoxseir MR.Corr2 MR.CUE MR.LDP MR.RGM MR.RGM mrf2d mrfse mritc mritc mRMRe mRMRe MRPATH mrtsSphere mrtsSphere MSEtool MultiCOAP MultiCOAP multilink multilink multinomialLogitMix multinomineq multinomineq MultiRFM MultiRFM multiScaleR multiScaleR multivar MultOrdRS MultOrdRS mutscan mutualinf mutualinf mvalpha mvalpha mvMAPIT mvMAPIT mvnfast mvnfast mvrsquared mvrsquared netClust netdiffuseR netdiffuseR NetMix NetMix netrankr netrankr NetworkChange NetworkChange NetworkDistance NetworkDistance neuroim2 neuroim2 nftbart ngme2 nlmeVPC nlmixr2est nlmixr2est NLPwavelet NLPwavelet nmslibR nmslibR nnmf nnsolve nnsolve nonneg.cg normr not NOVA NPCirc NPflow NPflow NScluster o2plsda o2plsda odin2test oeli oeli oem oem ohoegdm ohoegdm ompdetect openfhe OpenImageR OpenImageR OpenMx OPSR OPSR OptimalBinningWoE OptimalBinningWoE orthoDr orthoDr OutcomeWeights OutcomeWeights outliertree outliertree PAFit PAFit PAGFL PAGFL pagoda2 pagoda2 pairscale pairscale PANPRSnext parmigene parmigene PartialNetwork PartialNetwork patRoon PCMRS pense pense pgKDEsphere Phase123 phenofit phenofit phutil phutil PhysioExperiment pimeta pimeta PLFD PLFD pliman pliman plmmr plmmr PLNmodels poismf poismf pompp pompp poppr poppr PPMR PPMR pprof pprof pqrBayes pqrBayes praznik praznik probe probe ProfileGLMM ProfileGLMM profoc profoc ProjectionBasedClustering prospectr prospectr psbcSpeedUp psbcSpeedUp pscl PSGD PSGD psqn psqn psychonetrics psychonetrics qch qfratio qfratio qgg qtlpoly quadrupen quadrupen qualpalr qualpalr QuantilePeer QuantilePeer Quartet Quartet QUBIC quitefastmst quitefastmst Racmacs Racmacs ramr randomForestRHF randomForestRHF RandomForestsGLS randomForestSGT randomForestSGT randomForestSRC randomForestSRC rangen rangen rasterKernelEstimates rasterKernelEstimates ratematrix ratematrix Rborist rCausalMGM RcppArmadillo RcppArmadillo RcppBlaze RcppBlaze RcppCensSpatial RcppColors RcppColors RcppEigen RcppEnsmallen RcppEnsmallen RcppML RcppML rcppmlpackexamples rcppmlpackexamples RcppPlanc rcpptimer rcpptimer Rdimtools Rdimtools rdist rdist ReAD recometrics recometrics recosystem recosystem reda reda redist redist reglogit regmhmm regmhmm regnet regnet rehh relliptical relliptical remify remify remotePARTS remotePARTS remstimate remstimate resemble resemble reservr reservr Rfast Rfast Rfast2 Rfast2 rFerns rFerns RhpcBLASctl ribiosGSEA ridgeBART ridgeBART Riemann Riemann RiemBase RiemBase Rlibeemd rlibkriging rlibkriging Rlinsolve Rlinsolve Rlof RLT RLT RMFM RMFM rmgarch rmgarch RMR.ICP RMSS RMSS rMVP rMVP Rnanoflann RNiftyReg RNiftyReg roben roben roboBayes robustHD robustHD robustmatrix rofanova rofanova ROKET roll roll rolleigen rolloptim rollshap rollshap rpart.LAD rpc rpc rpf RPhosFate RPhosFate RprobitB RprobitB rrpack rrum rrum RSC Rsomoclu rsparse rsparse RSTr RSTr rsvddpd rsvddpd rTLS rTLS RTMBp rtorf rtrend rtrend Rtsne Rtsne rupturesRcpp rupturesRcpp Rvcg Rvcg RWNN RWNN rxode2 rxode2 rxode2ll rxode2ll s2net s2net saeMSPE SAGMM SAGMM SAM SAM sanba sanba SANple SANple SANvi SANvi SBmedian SBmedian scalablebayesm ScatterDensity ScatterDensity scClustEval sccore sccore scde scip SCORPION scregclust scregclust sd2R sd2R seine SelectBoost.gamlss SelectBoost.gamlss sentometrics sentometrics sentopics sentopics seqHMM seqHMM sgdGMF sgdGMF sgs sgs shapr shapr ShrinkCovMat ShrinkCovMat SHT SHT sievePH SiFINeT simer simer SimInf SimInf SIMplyBee SIMplyBee simStateSpace simStateSpace singR sircovid sitmo sitmo sits sits slcm slcm sleev sleev slideimp SLmetrics SLOPE SLOPE smarter SMASH smer smer smoots snpsettest snpsettest snreg snreg sommer sommer sox spAbundance spAbundance SpaceTimeBSS SpaCOAP SpaCOAP spaMM spanner spanner spanner SparseArray SparseArray sparseDFM sparseLTSEigen sparseLTSEigen sparsevb sparsevb sparseVCBART sparseVCBART spaths spaths SpatialBSS SpatMCA SpatMCA SpaTopic SpaTopic SpatPCA SpatPCA spBayes spBayes spBPS spBPS specs spEDM spfa spFFBS spFFBS spinBayes spinBayes SpliceWiz splikit splikit SPlit SplitGLM SplitGLM SplitReg SplitReg splmm spMC spMC spnn spnn spNNGP spNNGP spOccupancy spOccupancy SPOTlight springer springer squat squat ssgraph sshist sshist sstvars sstvars STAREG statespacer statespacer statgenGWAS statgenGWAS statgenQTLxT StatRec STB StealLikeBayes StealLikeBayes stelfi stelfi StempCens stepSplitReg stepSplitReg StochBlock stochQN stochtree stochtree stpphawkes stpphawkes stratEst stratEst STRIDER stringdist stringdist StuteTest subrank SubTite SuperpixelImageSegmentation SuperpixelImageSegmentation surtvep surtvep survkl survkl susieR svars svars SVP swjm swjm sylcount sylcount SynExtend T4cluster T4cluster T4transport T4transport tabularMLC tabularMLC tagtools tagtools targeted tci tci tclust tclust tcv TDAkit TDAkit TDAvec TDAvec tEDM textTinyR textTinyR tfarima tfarima tidylda tidylda tidypopgen tidypopgen tlars tlars TMB TMB tmvtnsim TPmsm TPmsm trajeR trajeR tramME tramME transfR transitreg transport transport TreeDist TreeDist treeSS treeSS TruncatedNormal TruncatedNormal tvR tvR twingp twinning UComp unmarked unmarked unmarked UPCM updog updog varPro varPro VARSELECTEXPOSURE VARtests VCBART VCBART VeccTMVN VeccTMVN VectorForgeML VectorForgeML vectra vein vein VEwaningVariant VIC5 VIC5 VIM visPedigree visPedigree vistla vistla VMDecomp VMDecomp vMF vMF vntrs vntrs vostokR vostokR vostokR walk watson watson wbacon wbacon wbsd wCorr wCorr wordspace wordspace WRShd XDNUTS xgboost xgboost XOMultinom XOMultinom ycevo ycevo yersinia |
|---|
| openmpi | High performance message passing library | | bigGP bigGP dress.graph dress.graph npRmpi pbdMPI pbdMPI pbdSLAP pbdSLAP Rmpi |
|---|
| openssl | Secure Sockets Layer toolkit | libssl-dev
| alabaster.base arcgisplaces arcgisplaces arrow arrow beachmat.hdf5 BigDataStatMeth chihaya CytoML drogonR drogonR DropletUtils EikonDownloader epigraHMM flowCore flowWorkspace gdscloud h5mread mongolite mongolite msoc mzR ncdfFlow ondisc ondisc openssl openssl pizzarr PKI PKI readspss rhdf5 rhdf5 rhdf5 RSclient RSclient Rserve Rserve rtracklayer s2 s2 smer smer stPipe telegramR telegramR websocket websocket |
|---|
| pangomm | C++ Wrapper for pango | libpangomm-1.4-dev
| HilbertVisGUI |
|---|
| pcre2 | New Perl Compatible Regular Expression Library | libpcre2-dev
| RcppCWB RcppCWB stringfish stringfish |
|---|
| poppler | PDF rendering library | libpoppler-cpp-dev
libpoppler-glib-dev
| pdftools pdftools Rpoppler |
|---|
| portaudio19 | Portable audio I/O | portaudio19-dev
| openmpt |
|---|
| postgresql | PostgreSQL C client library | libpq-dev
| adbcpostgresql adbcpostgresql RPostgres RPostgres RPostgreSQL RPostgreSQL |
|---|
| proj | Cartographic projection library | libproj-dev
| gdalBindings ICESat2VegR lwgeom lwgeom PROJ PROJ proj4 proj4 sf sf terra terra vol2birdR vol2birdR |
|---|
| protobuf | Protocol buffers C++ library | libprotobuf-dev
protobuf-compiler
| bigrquerystorage bigrquerystorage cld3 cld3 otelsdk otelsdk pjrt protolite protolite RProtoBuf RProtoBuf tfevents tfevents |
|---|
| quantlib | Quantitative Finance Library | libquantlib0-dev
| RQuantLib RQuantLib |
|---|
| redland | Redland Resource Description Framework (RDF) library | librdf0-dev
| redland redland |
|---|
| sqlite3 | SQLite 3 shared library | libsqlite3-dev
| adbcsqlite adbcsqlite seqminer seqminer |
|---|
| suitesparse | Sparse Cholesky factorization library for sparse matrices | libsuitesparse-dev
| rbff sparselu sparselu |
|---|
| tcl | Tcl (the Tool Command Language) v8.6 | libtcl8.6
| tkrplot |
|---|
| tesseract | Tesseract OCR library | libtesseract-dev
| tesseract tesseract |
|---|
| tiff | Tag Image File Format (TIFF) library -- C++ interface | libtiff-dev
| Cairo Cairo ijtiff ijtiff imager imager ragg ragg tiff tiff unigd unigd |
|---|
| tk | Tk toolkit for Tcl and X11 v8.6 - run-time files | libtk8.6
| tkrplot |
|---|
| udunits | Library for handling of units of physical quantities | libudunits2-dev
| RNetCDF RNetCDF udunits2 units units |
|---|
| unixodbc | ODBC Driver Manager library for Unix | unixodbc-dev
| odbc odbc odbc RODBC |
|---|
| xz-utils | XZ-format compression library | liblzma-dev
| bamsignals csaw deepSNV DiffBind diffHic epialleleR FLAMES h5vc iscream jackalope jackalope maftools methylKit mitoClone2 podkat QuasR raer Rhtslib Rsamtools scPipe VariantAnnotation vcfppR vcfppR |
|---|
| zeromq3 | Lightweight messaging kernel | libzmq3-dev
| clustermq clustermq pbdZMQ pbdZMQ rzmq rzmq |
|---|
| zlib | Compression library | zlib1g-dev
| affyio affyPLM alabaster.base bamsignals bigsnpr bigsnpr BinaryDosage bio3d BPCells BPCells cmtkr cmtkr cpp11bigwig cpp11bigwig cpp11qpdf csaw data.table DDIwR deepSNV DEploid DEploid DEploid.utils devEMF devEMF dgread DiffBind diffHic drogonR drogonR epialleleR FLAMES gaston gesel gmapR GMMAT GMMAT GRAB GRAB h5vc haven haven HiCDCPlus HiCDOC HiCParser hipread hipread iscream jackalope jackalope knowYourCG ksTFL maftools makecdfenv MethScope methylKit milorGWAS misha mitoClone2 mongolite mongolite mutscan NanoMethViz ndjson ndjson oligo patRoon pepitope pgenlibr podkat qpdf qpdf QuasR raer rbedrock rbedrock RcppCNPy RcppCNPy readspss Rfastp Rgraphviz Rhtslib rmatio rmatio Rmmquant RNifti RNifti Rsamtools Rsubread rtracklayer scPipe screenCounter seqinr seqinr seqminer seqminer ShortRead Signac Signac snpStats stPipe strawr strawr TAQMNGR tidypopgen tidypopgen transmogR unigd unigd VariantAnnotation vcfppR vcfppR vcfR vcfR vol2birdR vol2birdR writexl writexl XVector yyjsonr yyjsonr zlib |
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