| abseil | Extensions to the C++ standard library | libabsl-dev
| bigrquerystorage bigrquerystorage |
|---|
| alsa-lib | Shared library for ALSA applications | libasound2-dev
| harmonium |
|---|
| apparmor | Changehat AppArmor library | libapparmor-dev
| RAppArmor RAppArmor unix unix |
|---|
| arpack | Fortran77 subroutines to solve large scale eigenvalue problems | libarpack2-dev
| rlibkriging speakeasyR speakeasyR |
|---|
| bzip2 | High-quality block-sorting file compressor library | libbz2-dev
| bamsignals csaw deepSNV DiffBind diffHic epialleleR FLAMES GMMAT GMMAT h5vc jackalope jackalope maftools maftools methylKit mitoClone2 podkat QuasR raer Rhtslib Rsamtools scPipe seqminer seqminer TransView VariantAnnotation vcfppR vcfppR |
|---|
| c-blosc | High performance meta-compressor optimized for binary data | libblosc-dev
| Rarr Rarr |
|---|
| cairo | Cairo 2D vector graphics library | libcairo2-dev
| Cairo Cairo gdtools gdtools rsvg rsvg unigd unigd |
|---|
| clp | Coin-or linear programming solver | coinor-libclp-dev
| pcaL1 rcbc |
|---|
| coinor-cbc | Coin-or branch-and-cut mixed integer programming solver | coinor-libcbc-dev
| rcbc |
|---|
| coinor-symphony | COIN-OR solver for mixed-integer linear programs | coinor-libsymphony-dev
| lpsymphony Rsymphony Rsymphony |
|---|
| coinutils | COIN-OR collection of utility classes | coinor-libcoinutils-dev
| rcbc |
|---|
| curl | Easy-to-use client-side URL transfer library | libcurl4-openssl-dev
| arrow arrow bamsignals csaw curl curl deepSNV DiffBind diffHic epialleleR FLAMES h5vc HDF5Array jackalope jackalope maftools maftools methylKit mitoClone2 podkat QuasR raer RCurl rhdf5 rhdf5 Rhtslib Rsamtools rtracklayer scPipe strawr strawr TransView VariantAnnotation vcfppR vcfppR |
|---|
| cyrus-sasl2 | Cyrus SASL authentication abstraction library | libsasl2-dev
| mongolite mongolite |
|---|
| ffmpeg | FFmpeg library containing media filters | libavfilter-dev
| av av |
|---|
| fftw3 | Library for computing Fast Fourier Transforms | libfftw3-dev
| bioacoustics bioacoustics cartogramR diversitree diversitree fftw fftwtools fftwtools image.CannyEdges image.CannyEdges imager imager KSgeneral MFPCA MFPCA poisbinom poisbinom PoissonBinomial PoissonBinomial PoissonMultinomial qqconf qqconf ravetools ravetools Rssa Rssa spate spate specklestar spFW SuperGauss SuperGauss |
|---|
| fluidsynth | Real-time MIDI software synthesizer | libfluidsynth-dev
| fluidsynth fluidsynth |
|---|
| fontconfig | Generic font configuration library | libfontconfig-dev
| devEMF devEMF systemfonts systemfonts |
|---|
| fortran | Runtime library for GNU Fortran applications | | bain bain BayesFM bayesQR bayesQR BFpack BFpack BFpack bgw bsamGP BTSR caRamel caRamel catch causalSLSE cglasso clinfun clinfun clusterCrit clusterCrit clusterCrit CohensdpLibrary CohensdpLibrary coxphf coxphf coxphw coxphw crimCV DAISIE DAISIE dBlockmodeling DCCA Delaporte Delaporte deSolve deSolve dfsaneacc dglars DirStats DirStats DMMF DNAcopy dsdp dsdp dtrSurv DynamicGP DySS EcoNetGen EcoNetGen EpiILMCT EpiILMCT eRm extremis facets FAS FAS fastcox fastcox fastkqr frailtypack frontier frontier gcdnet gcdnet GeneSelectMMD geoBayes gglasso gglasso glasso glinvci glinvci glmnet gmm gmm groupTesting growth growth grpnet gslnls gslnls HDtweedie iClusterPlus islasso JLPM JLPM KERE kerndwd KFAS KFAS ktweedie ktweedie lbfgsb3c lbfgsb3c lcmm lcmm limSolve LMest localgauss lorec LWFBrook90R LWFBrook90R mcr mcrPioda mcrPioda midasml midasml momentfit momentfit mpath mpath mpmi mpmi mra mra mra MSCMT multimode multitaper multitaper MultNonParam Nmix NormPsy NormPsy npregfast npregfast npROCRegression npsp npsp NScluster numOSL NuPoP oc oc oscar oscar PEcAn.BASGRA prefmod PropClust PRTree PWEALL qgg qgg r3PG r3PG RaschSampler RefBasedMI RefBasedMI restrend RGN RGN rmumps rmumps RobustAFT rrelaxiv rsae rsae SALES SALES seq2R seq2R sequoia sequoia slp sm SmoothHazard smwrQW sparsegl sparsegl sparsenet svd svd swdpwr SynExtend TensorClustering tmvtnorm tmvtnorm transfR TreeSim trend tripack tseriesEntropy tseriesEntropy tseriesTARMA TSSS TULIP twdtw twdtw VCA vegan vegan WLreg wnominate wsbackfit |
|---|
| freetype | FreeType 2 font engine | libfreetype-dev
| Cairo Cairo devEMF devEMF gdtools gdtools R2SWF R2SWF R2SWF ragg ragg rgl rgl showtext showtext sysfonts sysfonts systemfonts systemfonts textshaping textshaping |
|---|
| fribidi | Free Implementation of the Unicode BiDi algorithm | libfribidi-dev
| textshaping textshaping |
|---|
| gdal | Geospatial Data Abstraction Library | libgdal-dev
| gdalBindings gdalcubes gdalcubes gdalraster gdalraster ICESat2VegR lasR rgdal rGEDIsimulator sf sf terra terra vapour vapour |
|---|
| geos | Geometry engine for Geographic Information Systems | libgeos-dev
| apcf apcf exactextractr exactextractr lwgeom lwgeom rgeos sf sf terra terra |
|---|
| glib | GLib library of C routines | libglib2.0-dev
| keyring keyring RcppCWB RcppCWB Rpoppler rsvg rsvg |
|---|
| glibc | GNU C Library: Shared libraries | libc6-dev
| bgx GeoModels GeoModels gslnls gslnls IAPWS95 IAPWS95 mongolite mongolite PEcAn.BASGRA pingr pingr r3PG r3PG SAPP SPECIES |
|---|
| glpk | Linear programming kit with integer (MIP) support | libglpk-dev
| glpkAPI igraph igraph leidenbase leidenbase rDEA rDEA Rglpk Rglpk sdcTable |
|---|
| gmp | Multiprecision arithmetic library | libgmp-dev
| arrangements arrangements corels corels FLSSS GeoFIS gmp hypergeo2 hypergeo2 interpolation interpolation jack jack qspray qspray RationalMatrix RationalMatrix ratioOfQsprays ratioOfQsprays rcdd RcppAlgos RcppAlgos RcppBigIntAlgos RcppBigIntAlgos resultant resultant Rmpfr Rmpfr sbrl sphereTessellation sphereTessellation sphereTessellation surveyvoi symbolicQspray symbolicQspray symengine symengine TDA |
|---|
| gpgme | GPGME - GnuPG Made Easy | libgpgme-dev
| gpg gpg |
|---|
| grpc | High performance general RPC framework | libgrpc++-dev
libgrpc-dev
| bigrquerystorage bigrquerystorage |
|---|
| gsl | GNU Scientific Library (GSL) | libgsl-dev
| abn abn AMOUNTAIN BayesVarSel BayesVarSel bbl BNSP catSurv catSurv ccfindR cit cit CLVTools CLVTools coga coga DirichletMultinomial diversitree diversitree dynr eaf eaf econetwork excursions excursions fingerPro flan flan flowPeaks frailtyMMpen frailtyMMpen fRLR fRLR GeneralizedWendland GLAD GPBayes GPBayes gsl gsl gslnls gslnls hgwrr hgwrr hSDM hSDM iBMQ immunoClust island jSDM jSDM landsepi LCMCR Libra libstable4u libstable4u lnmixsurv lnmixsurv markets mashr mashr mBvs mcrPioda mixcat mixture mmpca mmpca monoreg mvabund mvabund mvst PEPBVS PICS PING psbcGroup QF rcontroll rcontroll RcppGSL RcppGSL RcppZiggurat RcppZiggurat RDieHarder RDieHarder rGEDIsimulator ridge ridge RJMCMCNucleosomes RKHSMetaMod Rlibeemd Rlibeemd rnetcarto rnetcarto rtmpt rtmpt sbrl SemiCompRisks shrinkTVP SimInf SimInf simplexreg smam smam spaMM SPARSEMODr SPARSEMODr stpphawkes survSNP SymTS topicmodels VBLPCM vol2birdR vol2birdR |
|---|
| harfbuzz | OpenType text shaping engine ICU backend | libharfbuzz-dev
| Cairo Cairo textshaping textshaping |
|---|
| hdf5 | HDF5 High Level runtime files - serial version | libhdf5-dev
| BPCells hdf5r hdf5r RcppPlanc rGEDIsimulator vol2birdR vol2birdR |
|---|
| hiredis | Minimalistic C client library for Redis | libhiredis-dev
| heartbeatr RcppRedis RcppRedis redux redux |
|---|
| hwloc | Hierarchical view of the machine | libhwloc-dev
| RcppPlanc |
|---|
| icu | International Components for Unicode | libicu-dev
| Cairo Cairo stringi stringi |
|---|
| imagemagick | C++ interface to ImageMagick | libmagick++-6.q16-dev
libmagickcore-6.q16-dev
libmagickwand-6.q16-dev
| magick magick |
|---|
| jags | Just Another Gibbs Sampler for Bayesian MCMC | jags
| abmR abn abn afthd agRee altmeta ArchaeoChron auRoc BACCT bacistool baker baker bamdit BANOVA banter banter basksim basksim BayesCACE bayescount bayescount BayesGWQS BayesianMediationA bayesmix bayesMRM BayesOrdDesign BayesPostEst BayesPostEst BayesRS BayesRS BayesTwin BayesTwin BayLum BayLum BCHM bdribs beaver beaver beer BEND BEND BeQut bfw bfw bhmbasket bipd bipd blrm bnma bnma boral bsam bsam BTSPAS BTSPAS CCTpack CNVrd2 COMBO COMBO cosimmr cosimmr crmPack crmPack crmPack crossnma crossnma crputils CRTspat CRTspat CruzPlot CruzPlot dclone dclone dcmle dcmle doublIn doublIn dreamer dreamer EBASE EBASE EcoDiet EcoDiet eefAnalytics eefAnalytics eivtools eivtools eoa3 ern eSIR ewoc ewoc EWOC.Comb gbs2ploidy gconsensus gemtc gemtc gemtcPlus glossa glossa groupWQS handwriter handwriter handwriterApp handwriterApp hbbr hdbma HDSpatialScan HETOP HETOP HiLDA historicalborrow IIVpredictor infercnv IsotopeR isoWater jagshelper jagshelper jagstargets jagstargets jagsUI jagsUI jarbes JMbayes JMbayes jmbr JointAI JointAI lcra lcra lira longit MADSEQ MBNMAdose MBNMAdose MBNMAtime MBNMAtime mbpp mcmsupply mcmsupply mcp mcp midas2 midas2 MigConnectivity MigConnectivity miscF missingHE missingHE MixSIAR MixSIAR morse MPTmultiverse MPTmultiverse msaeHB NCC NCC neojags neojags nichetools nichetools NMADiagT NobBS NobBS occumb occumb optimalThreshold ordinalbayes ordinalbayes ordinalRR pcnetmeta PEcAn.all PEcAn.assim.batch PEcAn.BIOCRO PEcAn.data.land PEcAn.ED2 PEcAn.LDNDC PEcAn.LINKAGES PEcAn.MA PEcAn.photosynthesis PEcAn.priors PEcAn.SIPNET PEcAn.uncertainty PEcAn.workflow PEcAnAssimSequential PEcAnRTM Petersen Petersen pexm pexm phase1PRMD phase1PRMD phase1RMD phase1RMD phenoCDM pivmet pivmet popbayes popbayes PottsUtils prevalence prevalence psborrow psborrow PVAClone PVAClone R2jags R2jags RcmdrPlugin.RMTCJags remiod remiod reslr reslr rfPermute rfPermute rjags rnmamod rnmamod RoBMA RoBMA RoBSA RoBSA RobustBayesianCopas runjags saeHB saeHB.ME saeHB.ME.beta saeHB.ME.beta saeHB.panel saeHB.panel saeHB.panel.beta saeHB.panel.beta saeHB.unit saeHB.unit saeHB.ZIB SAME scDECO scDECO selectKSigs SeqFeatR sharx sharx SIBER SIBER simmr simmr snSMART snSMART sprex sprex ssifs ssifs strataG SurviMChd swfscAirDAS swfscAirDAS swfscDAS swfscDAS swfscMisc swfscMisc TreeBUGS TreeBUGS tRophicPosition UHM UHM unmconf vICC vICC zoib |
|---|
| jq | Lightweight and flexible command-line JSON processor | libjq-dev
| jqr jqr |
|---|
| libarchive | Multi-format archive and compression library | libarchive-dev
| archive archive |
|---|
| libdeflate | Fast, whole-buffer DEFLATE-based compression and decompression | libdeflate-dev
| GMMAT GMMAT MAGEE MAGEE pgenlibr |
|---|
| libgit2 | Low-level Git library | libgit2-dev
| gert gert git2r git2r |
|---|
| libglu | Mesa OpenGL utility library | libglu1-mesa-dev
| lidRviewer rgl rgl |
|---|
| libglvnd | Vendor neutral GL dispatch library | libgl-dev
| lidRviewer rgl rgl |
|---|
| libjpeg-turbo | Libjpeg-turbo JPEG runtime library | libjpeg-turbo8-dev
| Cairo Cairo jpeg jpeg qpdf qpdf ragg ragg |
|---|
| libpng | PNG library | libpng-dev
| ggiraph ggiraph png png R2SWF R2SWF R2SWF ragg ragg rgl rgl rvg rvg svglite svglite unigd unigd vdiffr vdiffr |
|---|
| librsvg | SAX-based renderer library for SVG files | librsvg2-dev
| rsvg rsvg |
|---|
| libsbml | System Biology Markup Language library | libsbml5-dev
| NetPathMiner rsbml |
|---|
| libsdl2 | Simple DirectMedia Layer | libsdl2-dev
| fluidsynth fluidsynth lidRviewer |
|---|
| libsecret | Secret store | libsecret-1-dev
| keyring keyring |
|---|
| libsodium | Network communication | libsodium-dev
| sodium sodium |
|---|
| libssh | Tiny C SSH library | libssh-dev
| ssh ssh |
|---|
| libunwind | Library to determine the call-chain of a program | libunwind-dev
| winch winch |
|---|
| libuv1 | Asynchronous event notification library | libuv1-dev
| httpuv httpuv httpuv |
|---|
| libwebp | Lossy compression of digital photographic images | libwebp-dev
| webp webp |
|---|
| libx11 | X11 client-side library | libx11-dev
| Cairo Cairo imager imager rayrender rayrender rgl rgl tkrplot |
|---|
| libxcrypt | Libcrypt shared library | libcrypt-dev
| Rserve Rserve |
|---|
| libxml2 | GNOME XML library | libxml2-dev
| CytoML igraph igraph leidenbase leidenbase NetPathMiner XBRL XML xml2 xml2 xslt xslt |
|---|
| libxslt | XSLT 1.0 processing library | libxslt1-dev
| xslt xslt |
|---|
| libzstd | Fast lossless compression algorithm | libzstd-dev
| fstcore GMMAT GMMAT MAGEE MAGEE pgenlibr qs qs qs Rarr Rarr seqminer seqminer |
|---|
| lz4 | Fast LZ compression algorithm library | liblz4-dev
| fstcore qs qs qs |
|---|
| mbedtls | Lightweight crypto and SSL/TLS library | libmbedtls-dev
| nanonext nanonext |
|---|
| mpfr4 | Multiple precision floating-point computation | libmpfr-dev
| GeoFIS hypergeo2 hypergeo2 multibridge multibridge Rmpfr Rmpfr scModels surveyvoi symengine symengine |
|---|
| mysql | MySQL database client library | libmysqlclient-dev
| RMariaDB RMariaDB RMySQL RMySQL |
|---|
| netcdf | Interface for scientific data access to large binary data | libnetcdf-dev
| gdalcubes gdalcubes ncapi ncdf4 RNetCDF RNetCDF |
|---|
| nng | Lightweight Messaging Library | libnng-dev
| nanonext nanonext |
|---|
| nodejs | Evented I/O for V8 javascript | libnode-dev
| V8 V8 |
|---|
| ocl-icd | Generic OpenCL ICD Loader | ocl-icd-opencl-dev
| gpuMagic |
|---|
| onetbb | Parallelism library for C++ | libtbb-dev
| markets proxyC proxyC quanteda quanteda quanteda.textstats seededlda seededlda |
|---|
| openbabel | Chemical toolbox library | libopenbabel-dev
| ChemmineOB |
|---|
| openblas | Optimized BLAS | | abclass abclass abctools abctools abn abn acc acebayes ACEt ACEt ACSSpack actuar adaHuber adaHuber ADAPT adaptivetau adaptivetau ade4 ade4 ade4 adespatial adespatial adimpro adlift admixtools ADMM ADMM ADMMsigma ADMMsigma affyPLM aftgee aftgee aftsem aftsem ahaz ahMLE aihuman aihuman AllelicSeries alpaca alpaca AlphaSimR AlphaSimR alqrfe Amelia anclik anMC anMC ANN2 ANN2 AntMAN AntMAN aorsf aorsf ape ape apollo ARCensReg ARCensReg ARCokrig ARCokrig arfima arfima arrApply arrApply asmbPLS asmbPLS assist ASV ATNr autoRasch Avionic24 aws BalancedSampling BalancedSampling bama bama bamlss bamp bamp BANDITS bandle bark bark BAS BAS BASiCS baskexact baskexact BASSLINE batchmix batchmix Bayenet Bayenet BayesComm BayesComm bayescopulareg bayescopulareg bayesCureRateModel BayesDLMfMRI BayesDLMfMRI bayesDP bayesDP bayesEO bayesEO BayesFM bayesianVARs bayesianVARs bayeslm bayeslm bayesm BayesMallows BayesMallows BayesPPD BayesPPDSurv bayesQR bayesQR Bayesrel Bayesrel BayesReversePLLH BayesRGMM BayesSpace BayesSUR BayesSUR bayesSurv BayesSurvive bayesWatch bayesWatch baygel baygel bayMDS bayou BCClong BCClong BCEE bcf bcf BClustLonG bcROCsurface bcROCsurface BCSub bcv bcv BDgraph BEKKs betaBayes beyondWhittle BFpack BFpack BGGM BGGM BGLR BGVAR BGVAR BHMSMAfMRI BHMSMAfMRI BHSBVAR biClassify bife bife BIFIEsurvey BIFIEsurvey bigalgebra bigalgebra bigergm bigGP bigMap bigReg bigReg bigsnpr bigsnpr bigstatsr bigstatsr bigtime bigtime BigVAR BigVAR binaryGP binGroup2 biosensors.usc biosensors.usc blatent blatent bliss bliss blockmodels blockmodels BLPestimatoR bmabasket bmabasket bnlearn BNPmix BoltzMM BoltzMM bonsaiforest bootCT bootUR bootUR BOSSreg bpgmm bpnreg bpnreg bpr BPRMeth bqtl BranchGLM BranchGLM BRISC brmsmargins brmsmargins brnn bsamGP BSPBSS BSPBSS bspline bspline bssm bssm BSSprep bsvars bsvars bsvarSIGNs bsvarSIGNs BTLLasso BTSR BTtest BTtest Buddle bvarsv bvarsv bvartools bvartools BVSNLP CAESAR.Suite CAESAR.Suite carat causalSLSE causl ccaPP ccaPP cccp ccImpute cda CDatanet CDatanet CEC CEC CelliD cellWise CERFIT CERFIT cglasso cglm changepoints changepoints chngpt chngpt CholWishart CholWishart cinterpolate cinterpolate circlus CircSpaceTime CircSpaceTime circumplex circumplex cIRT cIRT clarabel clarabel clubpro clubpro ClusPred clusterCrit clusterCrit clusterCrit clusterMI ClusterR ClusterR ClusVis CLVTools CLVTools cmfilter cmfrec cmfrec CMGFM CMGFM COAP COAP coda.base coda.base colorednoise colorednoise combinIT combinIT COMIX communication complex complex compositions coneproj conleyreg conleyreg conos conos conos conquer conquer ContaminatedMixt CoOL coop coop copCAR corrcoverage cosimmr cosimmr Countr Countr covdepGE covdepGE covglasso CovRegRF CovRegRF covTestR covTestR CovTools CovTools CoxPlus coxrt coxrt cPCG CPE CPGLIB CPGLIB cplm cplm cpr cpr cpss cpss cqrReg crandep crandep crawl crawl crimCV Crossover Crossover ctmcd cTMed cTMed CVR CytoML cytosignal CytoSimplex CytoSimplex dann dann DatabionicSwarm DatabionicSwarm DatAssim dateutils dateutils DCCA dccmidas dccpp dccpp dcov DCSmooth dcurver dcurver deBif deBif deepgp deforestable deform DegNorm demu densEstBayes densityratio DepthProc DepthProc deseats DESeq2 desla desla deSolve deSolve dfms dfms dfphase1 dglars DGM DGM DGP4LCF DGP4LCF diagis diagis didimputation DifferentialRegulation DIFM dina dina distinct diversitree diversitree dlm dmbc dmbc DMQ DoseFinding DoseFinding DOVE DR.SC DR.SC drclust drgee DriftBurstHypothesis DriftBurstHypothesis DRIP dsdp dsdp DSSP DSSP DstarM DstarM DSWE DSWE dti dtwclust dtwclust DynamicGP dynaTree dynmix dynmix DySS Eagle earth earthtide ebdbNet ebdbNet EBEN EBglmnet eBsc eBsc ebTobit ebTobit echoice2 echoice2 ecodist ecodist edgeR edina edina eDMA eegUtils EFAfactors EFAtools EFAtools eha eha eigen1 eimpute elmNNRcpp elmNNRcpp em em emBayes EMCluster EMCluster EMgaussian EMgaussian emIRT emIRT EMMIXgene empichar empichar endorse endorse epigraHMM EpiLPS EpiLPS epistasisGA equateMultiple EquiTrends EquiTrends ergmito ergmito errum errum esaddle esaddle esemifar esreg esreg estimateW etm etm eulerr eulerr evgam evgam evinf evinf evolqg evolqg ExhaustiveSearch ExhaustiveSearch experiment experiment expm expm expQ2 ExtremalDep ExtremalDep exuber exuber fabMix factorstochvol factorstochvol fad fad fanc FarmSelect FarmSelect FarmTest FarmTest fastadi fastadi FastBandChol fastcpd fastcpd fasterElasticNet fasterElasticNet fastGHQuad fastGHQuad fastGLCM fastGLCM fastglmpca fastglmpca fastICA fastkqr fastliu fastM fastmatrix fastmatrix FastSF fastTopics fastTopics FBFsearch fclust fctbases fctbases fdacluster fdacluster fdaMixed fdaMixed fdaSP fdasrvf fdasrvf fdesigns fDMA fDMA fect FGLMtrunc fICA filling filling FKF FKF FKF.SP FKF.SP flamingos flamingos FlexVarJM FlexVarJM float float FLORAL FLORAL flowWorkspace FMCCSD fmerPack fmf fmri forecast forecast fourierin fourierin fourPNO fourPNO fracdiff fracdiff FRASER FRESA.CAD FRESA.CAD FRESHD FRESHD funcharts funcharts FuzzySimRes FuzzySimRes fwildclusterboot GADAG gam gamsel gamselBayes GAS gaselect gaselect gasper gasper GauPro GauPro gcKrig gclm gclm GCPBayes GCPBayes GCSM GCSM GDINA GDINA gdpc gdpc gee GEEaSPU geigen geiger geiger GenSA geoBayes geocomplexity geocomplexity GeoDiff geoFKF geoFKF geoFourierFDA geoFourierFDA GeoModels GeoModels geostatsp gfiExtremes gfiExtremes GFM GFM ggdmc ggdmc GGMncv GGMncv GGMselect GGPA ggsc gigg gigg gjam glamlasso glamlasso Glarmadillo glcm glcm GLCMTextures GLCMTextures glinvci glinvci GLMaSPU GLMaSPU glmGamPoi glmm glmmEP glmmML GMCM GMCM GMKMcharlie gmm gmm GMMAT GMMAT gmtFD gmvjoint gmvjoint gMWT gMWT gnm gnm gofar gofar goffda goffda GofKmt goldfish goldfish GPCMlasso GPFDA GpGp GpGp GPM gps gps GPvam GPvecchia graper graphicalEvidence graphicalVAR gRbase gRbase greed greed GreedyEPL GRENITS gridOT gRim gRim grove growfunctions grpsel grpsel GSE gss gstat gstat gsynth GWASinlps GWASinlps GWmodel GxEScanR harmony harmony hawkes hdbm hdflex hdflex HDJM hdnom hdnom HDNRA HDNRA hdpGLM hdpGLM HDSpatialScan HDTD HDTSA HDtweedie hgm hgwrr hgwrr hibayes hibayes HiDimDA highfrequency highfrequency higlasso HistDAWass HistDAWass hitandrun hitandrun hkevp hkevp HLMdiag HLMdiag HMB hmcdm hmcdm HMMEsolver hpa HTLR HTLR hypervolume hypervolume iapws iAR ibr iccbeta iccbeta iClusterPlus iClusterVB iClusterVB ICSClust ICSClust ICtest idefix idefix iDOVE IFP igraph igraph ILSE ILSE imbalance imbalance inca inferCSN inferCSN infinitefactor INLAspacetime INLAspacetime interep interflex intkrige intkrige intrinsicFRP intrinsicFRP intsurv intsurv ipfp ipfp irlba irlba islasso ivdoctr ivdoctr ivsacim ivx ivx jackalope jackalope JFM JMbayes JMbayes JMbayes2 JMbayes2 jmcm joineRML joineRML jointDiag jointDiag jrSiCKLSNMF jSDM jSDM kalmanfilter kazaam kdecopula kdecopula kerndwd KernelKnn KernelKnn kernlab KernSmooth KFAS KFAS kimfilter KODAMA KODAMA KoulMde krige kyotil kyotil l0ara L0Learn L0Learn l1spectral LA laGP LAM LAM LaMa lamle Langevin lasR LassoGEE LassoGEE lassoshooting lassoshooting latentgraph latentnet latentnet lavacreg lavacreg lavaSearch2 lavaSearch2 lddmm ldsep ldsep ldsr ldsr ldt LEA lefko3 legion legion leidenbase leidenbase lemur leptokurticMixture lessSEM lessSEM lfa lfe lfe libcoin lidR lidR LikertMakeR LikertMakeR limSolve linconGaussR linconGaussR linelistBayes linelistBayes list list lit lit ljr lm.br LMest Lmoments lmSubsets lmSubsets lnmixsurv lnmixsurv localgauss lodr LogConcDEAD logconcens logspline longclust LongMemoryTS LongMemoryTS lorec lotri lotri lowmemtkmeans lowmemtkmeans lowpassFilter LowRankQP lpirfs lpirfs lpSolveAPI lqmm lsirm12pl ltsk ltsspca ltsspca ludic ludic luna lvmcomp lvmcomp MABOUST MAGEE MAGEE magi magree MAINT.Data malan malan manifold ManifoldOptim ManlyMix maotai maotai mapfit mapfit MAPITR MAPITR maptpx maptpx marble marble markerpen markerpen markophylo markovchain markovchain mashr mashr mastif MAT matchingMarkets matchingMarkets Matrix Matrix MatrixCorrelation MatrixCorrelation matrixdist matrixdist MatrixExtra MatrixExtra MatrixLDA MatrixLDA MAVE mboost mboost mccca mcemGLM mclust MCMCprecision MCMCprecision mcmcse mcmcse MDEI MDEI mdgc mdgc mdmb mdmb MendelianRandomization MendelianRandomization meshed meshed MESS MESS metafolio metafolio MetaHD metapack metapack metaRange metaRange meteorits meteorits mets mets mev mev mgcv MGMM MGMM miceadds miceadds miceFast miceFast microsimulation microsimulation mig mig miloR milr milr minimaxApprox minimaxApprox miniPCH miniPCH minpack.lm mirt mirt mirtCAT mirtCAT mirtjml mirtjml MiSPU MiSPU MissCP missoNet missoNet mixAK mixedBayes mixedBayes mixedCCA mixedCCA mixedMem mixedMem MixMatrix MixMatrix MixSim MixSim mixsqp mixsqp mixture MLEcens mlegp mlegp MLModelSelection mlpack mlrv mmcif mmcif MMGFM MMGFM mmsample MMVBVS MMVBVS MNARclust mnorm MNP MNP modeLLtest modeLLtest modsem modsem mombf mombf momentfit momentfit momentuHMM momentuHMM MomTrunc MomTrunc monomvn Morpho Morpho moveHMM moveHMM moveMMPP mp mp mpath mpath MR.Corr2 MR.CUE MR.LDP MR.RGM MR.RGM MRAID mrfDepth mrfDepth mrgsolve mrgsolve MrMediation MRPATH MSCMT MSGARCH msgps MSIMST MSIMST msm MSstats MSTest MSTest MTLR MTLR multAbund multbxxc MultiCOAP MultiCOAP multilevLCA multilink multilink multinomineq multinomineq MultiscaleDTM MultiscaleDTM multitaper multitaper multivar multivar MultNonParam MultOrdRS MultOrdRS MultSurvTests MultSurvTests mvMAPIT mvMAPIT mvMORPH mvMORPH MVMRcML mvnfast mvtnorm mvtnorm n1qn1 n1qn1 navigation navigation nbfar nbfar ncpen ncpen netClust netcmc netcontrol netdiffuseR netdiffuseR NetMix NetMix NetPathMiner netrankr netrankr NetRep NetRep NetworkDistance NetworkDistance nevada nevada ngspatial nimble nleqslv nlmixr2est nlmixr2est nlmixr2extra nlmixr2extra nlmm nlmm nlsur nonlinearTseries nonlinearTseries nonneg.cg nonneg.cg nonprobsvy nonprobsvy NPCirc NPflow NPflow nprobust npsp npsp o2plsda o2plsda oc oc oeli oeli oem oem ohoegdm ohoegdm onlineforecast onlinePCA OpenImageR OpenImageR optmatch optmatch orthoDr orthoDr OSFD OUTRIDER pacotest pacotest PAGFL PAGFL pagoda2 pagoda2 parallelDist parallelDist parglm parglm pARI pARI parma parma PartialNetwork PartialNetwork partition partition party party pcaL1 pcalg pcalg pcaPP pcaPP PCMBaseCpp PCMBaseCpp PCMRS pda pdSpecEst pdSpecEst pecora penAFT penalized PenCoxFrail penPHcure penPHcure pense pense PEPBVS pgee.mixed pgee.mixed pgKDEsphere pgmm pgsc pgsc phangorn phangorn phangorn PhaseType PhaseType phenofit phenofit PHSMM PhylogeneticEM PhylogeneticEM phylosignal phylosignal phyr phyr PINSPlus planar pleiotest pleiotest PLFD PLFD plgp pliman PLNmodels PLNmodels PLSiMCpp pmartR pmartR poismf poismf polspline polyapost POMaSPU pomp pomp popPCR popPCR porridge PPCI PPforest PPforest ppgmmga ppgmmga PPMR PPMR PPSFS PPSFS PPtreeregViz PPtreeregViz PQLseq pqrBayes pqrBayes pqrfe PRDA PRDA PRECAST predkmeans predkmeans preprocessCore PRIMME probe probe ProFAST ProFAST profoc profoc projpred projpred pRoloc prospectr prospectr prototest proxyC proxyC PRTree psbcSpeedUp psbcSpeedUp psd psd PSGD PSGD psgp psqn psqn psychonetrics psychonetrics puniform puniform pyinit pyinit qbld qch qfa qgg qgg qif qif qpgraph QR qris qris qtl qtl qtlpoly qtlpoly QTLRel quadprog quadrupen quadrupen quanteda.textmodels quanteda.textmodels quantreg QuantRegGLasso QuantRegGLasso QZ QZ Racmacs Racmacs rags2ridges rags2ridges ramcmc ramcmc RandomFields RandomFieldsUtils RandomFieldsUtils RandomForestsGLS rare rare ratematrix ratematrix rbridge RcppArmadillo RcppArmadillo RcppBlaze RcppBlaze RcppCensSpatial RcppCensSpatial RcppDist RcppDist RcppEigen RcppEigen RcppEnsmallen RcppEnsmallen RcppHMM RcppKalman RcppPlanc RcppSMC RcppSMC Rcsdp Rcsdp Rdimtools Rdimtools rdist rdist Rdsdp ReAD RealVAMS redist redist redistmetrics redistmetrics rEDM registr registr regmed regmhmm regmhmm regnet regnet regsem regsem relliptical relliptical remstimate remstimate rENA repolr reReg reReg resemble resemble reservr reservr revdbayes revdbayes revealedPrefs rexpokit rexpokit Rfast Rfast Rfast2 Rfast2 RFCCA RFCCA Rforestry Rforestry ridgetorus ridgetorus Riemann Riemann RiemBase RiemBase riskRegression riskRegression RJcluster rlibkriging rliger rliger Rlinsolve Rlinsolve RLT RLumModel RLumModel rmarchingcubes rmarchingcubes rmgarch rmgarch rmi Rmodule RMSS RMSS rmumps rmumps rMVP rMVP Rnanoflann RNOmni RNOmni roben roben RoBMA RoBMA roboBayes robregcc robregcc RobStatTM RobStatTM robStepSplitReg robStepSplitReg robsurvey robsurvey robust robust robustarima robustarima robustbase robustbase robustBLME robustBLME robustcov robustcov robustHD robustHD robustlmm robustlmm robustmatrix rofanova rofanova ROI.plugin.qpoases roll roll rolleigen rolloptim rollshap roptim roptim rotations rotations rpeaks Rphylopars Rphylopars rpm rpm rpms rpql RprobitB RprobitB rr rrcov rrcov RRI rrMixture rrpack rrum rrum rsae rsae RSpectra RSpectra rSpectral rSpectral RSSL RSSL RStoolbox RStoolbox rstpm2 rstpm2 rsvddpd rsvddpd RTMB RTMB RTMBp rtrend rtrend Rtsne Rtsne rust rust RWNN RWNN rxode2 rxode2 s2net s2net saeMSPE saeRobust saeRobust SAGMM SAGMM SAIGEgds SAMGEP SAMGEP samplr samplr samurais samurais SANvi SANvi sarima sarima sasfunclust sasfunclust SBmedian SBmedian sbmSDP SC.MEB SC3 ScatterDensity ScatterDensity scde scGPS scINSIGHT scINSIGHT scmap scMitoMut scoringRules scoringRules scran scs scs sctransform scuttle sdetorus sdetorus sdpdth sdsfun sdsfun secure sem semidist semidist sentometrics sentometrics sentopics sentopics seqHMM seqHMM sfcr sfcr SFSI SFSI sgd sgd SGDinference SGDinference sglasso sgolay sgolay sgs sgs shapr shapr ShrinkCovMat ShrinkCovMat shrinkDSM shrinkTVP shrinkTVPVAR SHT SHT Sieve sievePH sievePH signeR SimBIID SimBIID simcdm simcdm SimJoint SIMLR simmr simmr simStateSpace simStateSpace SimSurvNMarker SimSurvNMarker simts simts singR sirt sirt sits sits slalom slam slcm slcm sleev slfm SLOPE SLOPE slp smaa smaa SMMA SMME smmR smooth smooth smoots smurf smurf SNPRelate snpsettest snpsettest SoftBart sommer sommer sorcering sox spAbundance spAbundance SpaCCI SpaceTimeBSS SpaCOAP SpaCOAP spam spam64 SPARK sparseDFM sparsereg sparseSEM sparsevb SpatialBSS SpatialExtremes SpatialExtremes spatialreg spatialreg SpatialTools SpatialTools SpatMCA SpatMCA SpaTopic SpaTopic SpatPCA SpatPCA spBayes spBayesSurv spBFA spBFA spBPS spc spCP spCP spcr specs spectralGraphTopology spectralGraphTopology spfa spFW sphunif sphunif spikeSlabGAM spikeSlabGAM spinBayes spinBayes splines2 splines2 splmm spMC spnn spnn spNNGP spOccupancy spOccupancy springer springer sprintr sprintr spStack spStack srm srm ssgraph Sshaped SSOSVM SSOSVM sstvars sstvars STAREG starma starma statespacer statespacer statgenGWAS statgenGWAS statgenQTLxT stcos stcos StempCens stepR stepSplitReg stepSplitReg stm stm stochQN stochvol stochvol stpm stpphawkes stratEst stratEst strucchangeRcpp strucchangeRcpp sts StuteTest subplex subplex SubTite supclust supclust superml superml SuperpixelImageSegmentation SuperpixelImageSegmentation surbayes surbayes SurrogateRegression SurrogateRegression surtvep surtvep survAUC survAUC SurvivalClusteringTree svars svars svd svd SVP switchSelection symmetry symphony synlik synMicrodata T4cluster T4cluster T4transport T4transport tabularMLC tabularMLC TAG TAM TAM TapeS TapeS targeted targeted TCIU tclust tclust TDAkit TDAkit telefit telefit tensorBSS TestDesign TestDesign tetrascatt tetrascatt textTinyR textTinyR tfarima tfarima tgp tgstat tgstat tidypopgen timereg timereg tlars tlars tlrmvnmvt TMB TMB tmvtnorm tmvtnorm tmvtnsim TPmsm TPmsm TreeBUGS TreeBUGS treenomial treenomial TruncatedNormal TruncatedNormal tsBSS tseries tseriesTARMA tsPI tsPI tvR tvR ubms ubms ucminf ucminf UComp unmarked unmarked UPCM updog updog UtilityFrailtyPH12 varband varband VARDetect VARSELECTEXPOSURE VarSelLCM VarSelLCM VBJM VCA vcpen vcrpart VeccTMVN VeccTMVN vegan vegan velocyto.R VEwaningVariant VMDecomp VMDecomp vMF vMF volesti walk walker walker waspr waspr watson WaveSampling WaveSampling wbacon wbacon wCorr wCorr wdnet wdnet WeibullR weibulltools weibulltools winsorize womblR womblR WRI wv wv XDNUTS yuima yuima zic ZVCV ZVCV |
|---|
| opencv | Computer vision Video analysis library | libopencv-photo-dev
libopencv-videoio-dev
libopencv-imgcodecs-dev
libopencv-objdetect-dev
libopencv-imgproc-dev
libopencv-core-dev
libopencv-contrib-dev
libopencv-video-dev
libopencv-highgui-dev
| image.textlinedetector image.textlinedetector opencv opencv |
|---|
| openjdk | OpenJDK Java runtime, using Hotspot JIT | openjdk-21-jre-headless
| Achilles AgroTech AHPWR AntAngioCOOL AQEval AQEval arulesNBMiner arulesNBMiner aslib aslib Avionic24 AWR AWR AWR.Kinesis AWR.Kinesis babette babette bartMachine bartMachineJARs bartMan BASiNET BEACH beastier beastier BeastJar BeastJar bmggum bmggum bnpa boilerpipeR boilerpipeR BridgeDbR CBSr CBSr ccpsyc ChoR CHRONOS CirceR CirceR CohortAlgebra CohortAlgebra CohortExplorer CohortExplorer CohortGenerator CohortGenerator collUtils collUtils CommonDataModel comunicacion ConvertPar ConvertPar corehunter coreNLP Crossover Crossover D2MCS D2MCS d4t4tur daltoolboxdp daltoolboxdp DaMiRseq DatabaseConnector DatabaseConnector DatabaseConnectorJars DatabaseConnectorJars DataClean DataClean DataLoader debCAM DecorateR DecorateR Deducer DeepPINCS denguedatahub denguedatahub dialr dialr dialrjars dialrjars DIDmultiplegt DIDmultiplegtDYN DIscBIO DIscBIO disclosuR disclosuR DIZutils DIZutils DQAgui DQAgui DQAstats DQAstats drawsample drawsample dsa ELT enmSdmX enmSdmX EnsembleBase EnsembleCV EnsemblePCReg EnsemblePenReg eprscope esATAC Eunomia Eunomia EvidenceSynthesis EvidenceSynthesis evoper evoper fastreeR FeatureExtraction FeatureExtraction FishEconProdOutput fsdaR fsdaR FSelector FSelector G2Sd GARS GenProSeq geogenr geogenr GetDFPData GetDFPData ggdemetra ggdemetra ggdemetra3 GGUM GGUM glmulti gMCP gMCP GreedyExperimentalDesign GreedyExperimentalDesign GreedyExperimentalDesignJARs GTbasedIM helloJavaWorld hive html2pdfr iBART iBART InflectSSP informativeSCI informativeSCI InSilicoVA InSilicoVA intamapInteractive InterfaceqPCR iplots ISM JATSdecoder JATSdecoder JavaGD JavaGD JGR jNSMR joinXL joinXL jplantuml4r lar lilikoi LipinskiFilters llama LLM loa loa MadanText MadanText MadanTextNetwork MadanTextNetwork mailR mailR mallet mallet massSpectrometryR matchingMarkets matchingMarkets mauricer mauricer mcbette mcbette metabinR MetChem miRSM mMARCH.AC mMARCH.AC moodef moodef MorbiditySpainR MS2Quant MultiGroupSequential mutossGUI mwa NicheBarcoding NicheBarcoding NLPutils nodeSub nodeSub ODB ODB odkr oii openNLP openNLPdata OpenStreetMap OpenStreetMap openVA openVA OptimalRerandExpDesigns OptimalRerandExpDesigns oRus OSMscale OSMscale patRoon paxtoolsr pems.utils pems.utils postGGIR psData qCBA qCBA qdap qdap r5r r5r rapidraker rapidraker RBioFormats rCBA rCBA rcdk rcdklibs rcdklibs rChoiceDialogs Rcurvep Rcurvep Relectoral REPPlab REPPlab REPPlabShiny restoptr restoptr ResultModelManager ResultModelManager rexer rexer rflsgen rflsgen RGMQL rGroovy RH2 RH2 rJava rjd3bench rjd3filters rjd3highfreq rjd3nowcasting rjd3providers rjd3report rjd3revisions rjd3stl rjd3sts rjd3toolkit rjd3tramoseats rjd3workspace rjd3x11plus rjd3x13 RJDBC RJDBC RJDemetra RJDemetra rjdmarkdown rjdmarkdown rjdqa rjdqa rjdworkspace rjdworkspace RJSDMX RJSDMX rkafkajars RKEA RKEAjars RKEEL RMassBank rmcfs rmelting RMOA RMOAjars RNCBIEUtilsLibs RNetLogo RNetLogo rolap rolap rOmniDriver roogledocs rQSAR rRDP rRDP rrepast rrepast RSCAT RSCAT RSentiment RSP rsubgroup rviewgraph RWeka RWekajars RxnSim RxnSim sarks SAvalidation scagnostics scagnostics sdpdth SELEX SensMap SensMap shelltrace shelltrace simplace simplace simplaceUtil sjdbc slowraker slowraker SpatialOmicsOverlay spcosa SQLove SQLove SqlRender SqlRender staplr staplr stops stops streamMOA streamMOA subspace surveycto survHE survHEhmc survHEinla swipeR swipeR tabulapdf tabulapdf tangela testRapi tpfp tssim tvCoef VAExprs venneuler venneuler wallace wallace WhatsR when when wordnet XLConnect XLConnect xlsx xlsx xlsxjars xlsxjars |
|---|
| openjpeg2 | JPEG 2000 image compression/decompression library | libopenjp2-7-dev
| divest divest |
|---|
| openmp | GCC OpenMP (GOMP) support library | | abclass abclass abess abn abn acebayes ACSSpack adaptIVPT adaptIVPT adelie adelie adimpro adjclust adjclust ADMM ADMM aftsem aftsem aihuman aihuman alcyon AllelicSeries AlphaSimR AlphaSimR AnaCoDa AnaCoDa ANN2 ANN2 AntMAN AntMAN aorsf aorsf Apoderoides Apoderoides apollo ARCensReg ARCensReg ARCokrig ARCokrig asmbPLS asmbPLS ASV atakrig ATNr autoFRK autoRasch aws awsMethods banditpam bandle BART bartcs bartcs BASiCS batchmix batchmix Bayenet Bayenet bayescopulareg bayescopulareg BayesDLMfMRI BayesDLMfMRI bayesEO bayesEO BayesMallows BayesMallows bayesPO bayesPO BayesPPD BayesPPDSurv BayesReversePLLH BayesRGMM BayesSpace BayesSUR BayesSUR BayesSurvive baygel baygel bayNorm BCClong BCClong BCEE BDgraph BEKKs BET BGData BGData BGGM BGGM BHMSMAfMRI BHMSMAfMRI BHSBVAR biClassify bigergm biglasso biglasso BigQuic bigsnpr bigsnpr bigstatsr bigstatsr biosensors.usc biosensors.usc blatent blatent blockcluster bmabasket bmabasket BNPmix bonsaiforest bpgmm bpnreg bpnreg bpr BranchGLM BranchGLM brif BRISC brmsmargins brmsmargins brnn bssm bssm bsvarSIGNs bsvarSIGNs BTtest BTtest Buddle BUSseq bvhar bvhar CAESAR.Suite CAESAR.Suite carat cartogramR CausalGPS CausalGPS causl CautiousLearning ccImpute CDatanet CDatanet celda CelliD cellWise CFC cglm cheapr cheapr chromstaR circlus CircSpaceTime CircSpaceTime circtree circumplex circumplex cIRT cIRT clubpro clubpro ClusterR ClusterR CLVTools CLVTools cmfilter cmfrec cmfrec CMGFM CMGFM COAP COAP collapse collapse Colossus Colossus combinIT combinIT COMIX communication conleyreg conleyreg conos conos conos conquer conquer coop coop cophescan cophescan copre copre CORElearn cosimmr cosimmr countdata covdepGE covdepGE CovRegRF CovRegRF CPGLIB CPGLIB cpss cpss crctStepdown csdR ctl ctmcd cTMed cTMed CWT CWT dccpp dccpp DCSmooth dcurver dcurver DECIPHER deepgp deform DegNorm Delaporte Delaporte DeMixT demu densityratio densvis DepthProc DepthProc deseats desla desla dexter dexter dexterMST dfmta DGM DGM didimputation DIFM dipm dlmtree dlmtree dmbc dmbc DNABarcodes dnn dotCall64 DOVE drclust DriftBurstHypothesis DriftBurstHypothesis dsem dsem DSSP DSSP dust dust2 DynamicGP Eagle Eagle ebTobit ebTobit echoice2 echoice2 econetwork eDMA eegUtils EFAfactors EFAtools EFAtools elfDistr elfDistr elgbd elgbd elmNNRcpp elmNNRcpp em em emBayes emIRT emIRT empichar empichar epigraHMM epigrowthfit epigrowthfit EpiLPS EpiLPS epiworldR epiworldR ergmito ergmito errum errum ETAS ETAS evgam evinf evinf excursions excursions expQ2 expSBM fabMix fanc FarmTest FarmTest fastadi fastadi fastcpd fastcpd fasterElasticNet fasterElasticNet fastGLCM fastGLCM fastJT fastLink fastLink fastliu fastpos fastpos fdacluster fdacluster fdaSP fdasrvf fdasrvf fdesigns fDMA fDMA fedmatch FENmlm FGLMtrunc fHMM fHMM fido fido filling filling fixest fixest float float FLORAL FLORAL FMCCSD fmerPack fmf fourPNO fourPNO frailtypack FRESA.CAD FRESA.CAD FRESHD FRESHD fRLR fRLR FSInteract fstcore fwildclusterboot GauPro GauPro GCSM GCSM GeneScape genie genie genieclust genieclust geocmeans geocmeans geocomplexity geocomplexity GeoDiff geoFKF geoFKF geoFourierFDA geoFourierFDA gfiExtremes gfiExtremes ggsc gjam GLCMTextures GLCMTextures glinternet glinvci glinvci gllvm glmmrOptim glmmrOptim glmmTMB glmmTMB gmGeostats gmvjoint gmvjoint goat goat goftte goldfish goldfish gower gower GPBayes GPBayes gpboost GPCMlasso GPFDA GpGp GpGp GPM GPvecchia graphicalEvidence grattan grattan grattanInflators grattanInflators gravmagsubs greed greed gridOT groupedSurv GWmodel GxEScanR hashr hashr hawkesbow hawkesbow HDclust hdflex hdflex HDNRA HDNRA HDTD HDTSA healthyAddress healthyAddress hgwrr hgwrr hibayes hibayes highfrequency highfrequency higlasso HistDAWass HistDAWass hkevp hkevp HMB hmcdm hmcdm hpa hrt hsphase HTLR HTLR huge huge hutilscpp hutilscpp iAR iBMQ iClusterVB iClusterVB icr icr idefix idefix iDOVE image.CornerDetectionHarris image.CornerDetectionHarris image.libfacedetection image.libfacedetection imager imager infinitefactor influenceR influenceR interep interflex intRinsic intRinsic intrinsicFRP intrinsicFRP intsurv intsurv invgamstochvol ipsecr ipsecr iq iq ISoLDE isotree isotree JMbayes JMbayes JMbayes2 JMbayes2 joineRML joineRML jrSiCKLSNMF kalmanfilter KernelKnn KernelKnn kimfilter kit kit kmBlock kohonen LA laGP LaMa lamle Langevin lasR LassoGEE LassoGEE lavacreg lavacreg lddmm ldsep ldsep ldsr ldsr ldt lessSEM lessSEM lfl lfl lidR lidR lightgbm linconGaussR linconGaussR lit lit Lmoments lotri lotri lowmemtkmeans lsirm12pl ludic ludic lvmcomp lvmcomp MABOUST maotai maotai MAPITR MAPITR marble marble markerpen markerpen mashr mashr matchingMarkets matchingMarkets MatchIt MatchIt matrixdist matrixdist MatrixExtra MatrixExtra mccca MDEI MDEI MDFS mdgc mdgc meanr meanr meanShiftR meanShiftR melt melt meshed meshed metapack metapack methimpute mev mev mgcv mgsa miceFast miceFast mig mig miic miic miloR miniPCH miniPCH miRNAss mirt mirt mirtjml mirtjml MixAll mixedBayes mixedBayes mixgb MixMatrix MixMatrix mixture mlpack mlrv mmand mmand mmcif mmcif mmcm mmcm MMGFM MMGFM mmpca mmpca mnorm modsem modsem moire mombf monty Morpho Morpho motifcounter MPCR mpmi MR.Corr2 MR.CUE MR.LDP MR.RGM MR.RGM mrfse mritc mritc MrMediation mRMRe mRMRe MRPATH MSTest MSTest MultiCOAP MultiCOAP multilink multilink multinomialLogitMix multinomineq multinomineq multivar multivar MultOrdRS MultOrdRS mvMAPIT mvMAPIT mvnfast mvrsquared mvrsquared NAIR NAIR netClust netdiffuseR netdiffuseR NetMix NetMix netrankr netrankr NetworkDistance NetworkDistance nftbart nlmeVPC nlmixr2est nlmixr2est nmslibR nmslibR nn2poly nn2poly nonneg.cg normr not NPCirc NPflow NPflow nprobust NScluster nuggets nuggets o2plsda o2plsda oem oem ohoegdm ohoegdm OpenImageR OpenImageR OpenMx orthoDr orthoDr outliertree outliertree PAFit PAFit PAGFL PAGFL pagoda2 pagoda2 PANPRSnext parmigene parmigene PartialNetwork PartialNetwork PCMRS penPHcure penPHcure pense pense pgKDEsphere pgsc pgsc Phase123 phenofit phenofit pimeta pimeta PLFD PLFD pliman plmmr plmmr PLSiMCpp poismf poismf pompp pompp poppr poppr PPMR PPMR PQLseq pqrBayes pqrBayes praznik praznik probe probe profoc profoc ProjectionBasedClustering prospectr prospectr psbcSpeedUp psbcSpeedUp PSGD PSGD psqn psqn qch qfratio qfratio qris qris qtlpoly qtlpoly QUBIC Racmacs Racmacs RandomFields RandomFieldsUtils RandomFieldsUtils RandomForestsGLS randomForestSRC rasterKernelEstimates rasterKernelEstimates ratematrix ratematrix Rborist RcppArmadillo RcppArmadillo RcppBlaze RcppBlaze RcppCensSpatial RcppCensSpatial RcppColors RcppColors RcppEnsmallen RcppEnsmallen RcppLbfgsBlaze RcppLbfgsBlaze RcppML RcppML rcpptimer rcpptimer Rdimtools Rdimtools rdist rdist ReAD recosystem recosystem redist redist reglogit regmhmm regmhmm regnet regnet rehh relliptical relliptical remify remify remotePARTS remotePARTS remstimate remstimate resemble resemble reservr reservr Rfast Rfast Rfast2 Rfast2 RFCCA RFCCA rFerns rflann RFpredInterval RFpredInterval rGADEM RhpcBLASctl Riemann Riemann RiemBase RiemBase RJcluster Rlibeemd Rlinsolve Rlinsolve Rlof RLT RLT rmgarch rmgarch RMSS RMSS rMVP rMVP Rnanoflann RNiftyReg RNiftyReg roben roben roboBayes robustcov robustcov robustHD robustHD robustmatrix rofanova rofanova roll roll rolleigen rolloptim rollshap rpart.LAD rpf RPhosFate RPhosFate RprobitB RprobitB rrpack rrum rrum RSC rsetse Rsomoclu rsvddpd rsvddpd RTMBp rtrend rtrend Rtsne Rtsne runibic Rvcg RWNN RWNN rxode2 rxode2 s2net s2net saeMSPE SAM SAM SANple SANple SANvi SANvi sasfunclust sasfunclust SBmedian SBmedian ScatterDensity ScatterDensity scde sentometrics sentometrics sentopics sentopics seqHMM seqHMM sgs sgs shapr shapr ShrinkCovMat ShrinkCovMat SHT SHT sievePH simer simer SimInf SimInf SIMplyBee SIMplyBee simputation simStateSpace simStateSpace SimSurvNMarker SimSurvNMarker singR sircovid sitmo sitmo sits sits slcm slcm sleev SMME smoots snpsettest snpsettest sommer sommer sox spAbundance spAbundance SpaceTimeBSS SpaCOAP SpaCOAP spaMM SPARK SparseArray SparseArray sparseDFM sparseLTSEigen sparseLTSEigen sparsevb spaths spaths SpatialBSS SpatialKWD SpatMCA SpatMCA SpaTopic SpaTopic SpatPCA SpatPCA spBayes spBPS specs spfa spinBayes spinBayes SpliceWiz SPlit SplitGLM SplitGLM SplitReg SplitReg splmm spMC spnn spnn spNNGP spOccupancy spOccupancy springer springer squat squat ssgraph sstvars sstvars STAREG statespacer statespacer statgenGWAS statgenGWAS statgenQTLxT STB stelfi StempCens stepSplitReg stepSplitReg StochBlock stochQN stpm stpphawkes stratEst stratEst stringdist stringdist StuteTest subrank SubTite SuperpixelImageSegmentation SuperpixelImageSegmentation surbayes surbayes surtvep surtvep svars svars SVP sylcount sylcount SynExtend T4cluster T4cluster T4transport T4transport tabularMLC tabularMLC targeted targeted tci tci tclust tclust TDAkit TDAkit textTinyR textTinyR tfarima tfarima tidylda tidylda tidypopgen tlars tlars TMB TMB tmvtnsim TPmsm TPmsm tramME tramME transport transport treenomial treenomial TruncatedNormal TruncatedNormal tvR tvR twingp twinning UComp unmarked unmarked UPCM updog updog VARDetect VARSELECTEXPOSURE VeccTMVN VeccTMVN vein vein velocyto.R VEwaningVariant VIC5 VIC5 vistla VMDecomp VMDecomp vMF vMF watson wbacon wbacon wbsd wCorr wCorr wordspace wordspace XDNUTS xgboost ycevo ycevo |
|---|
| openmpi | High performance message passing library | | bigGP pbdMPI pbdMPI pbdSLAP pbdSLAP Rmpi |
|---|
| openssl | Secure Sockets Layer toolkit | libssl-dev
| arcgisplaces arcgisplaces arcgisplaces arrow arrow EikonDownloader HDF5Array mongolite mongolite msoc openssl openssl PKI PKI readspss rhdf5 rhdf5 RSclient RSclient Rserve Rserve rtracklayer s2 s2 websocket websocket |
|---|
| pcre2 | New Perl Compatible Regular Expression Library | libpcre2-dev
| RcppCWB RcppCWB stringfish stringfish |
|---|
| poppler | PDF rendering library | libpoppler-glib-dev
libpoppler-cpp-dev
| pdftools pdftools Rpoppler |
|---|
| postgresql | PostgreSQL C client library | libpq-dev
| adbcpostgresql adbcpostgresql RPostgres RPostgres RPostgres RPostgreSQL RPostgreSQL |
|---|
| proj | Cartographic projection library | libproj-dev
| gdalBindings ICESat2VegR lwgeom lwgeom PROJ PROJ proj4 proj4 rgdal sf sf terra terra vol2birdR vol2birdR |
|---|
| protobuf | Protocol buffers C++ library | libprotobuf-dev
| bigrquerystorage bigrquerystorage cld3 cld3 protolite protolite RProtoBuf RProtoBuf tfevents tfevents |
|---|
| quantlib | Quantitative Finance Library | libquantlib0-dev
| RQuantLib RQuantLib |
|---|
| redland | Redland Resource Description Framework (RDF) library | librdf0-dev
| redland redland |
|---|
| sqlite3 | SQLite 3 shared library | libsqlite3-dev
| adbcsqlite adbcsqlite seqminer seqminer |
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| suitesparse | Sparse Cholesky factorization library for sparse matrices | libsuitesparse-dev
| rbff |
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| tcl | Tcl (the Tool Command Language) v8.6 | libtcl8.6
| tkrplot |
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| tesseract | Tesseract OCR library | libtesseract-dev
| cpp11tesseract cpp11tesseract tesseract tesseract |
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| tiff | Tag Image File Format (TIFF) library -- C++ interface | libtiff-dev
| Cairo Cairo ijtiff ijtiff imager imager ragg ragg tiff tiff unigd unigd |
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| tk | Tk toolkit for Tcl and X11 v8.6 - run-time files | libtk8.6
| tkrplot |
|---|
| udunits | Library for handling of units of physical quantities | libudunits2-dev
| RNetCDF RNetCDF udunits2 units units |
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| unixodbc | ODBC Driver Manager library for Unix | unixodbc-dev
| odbc odbc RODBC |
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| xz-utils | XZ-format compression library | liblzma-dev
| bamsignals csaw deepSNV DiffBind diffHic epialleleR FLAMES h5vc jackalope jackalope maftools maftools methylKit mitoClone2 podkat QuasR raer Rhtslib Rsamtools scPipe TransView VariantAnnotation vcfppR vcfppR |
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| zeromq3 | Lightweight messaging kernel | libzmq3-dev
| clustermq clustermq pbdZMQ pbdZMQ rzmq rzmq |
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| zlib | Compression library | zlib1g-dev
| affyio affyPLM alabaster.base bamsignals beachmat.hdf5 bigsnpr bigsnpr bio3d BPCells chihaya csaw CytoML deepSNV DEploid DEploid devEMF devEMF DiffBind diffHic DropletUtils epialleleR epigraHMM FLAMES flowWorkspace gamstransfer gamstransfer gaston gmapR GMMAT GMMAT h5vc haven haven HDF5Array HiCDCPlus HiCDOC hipread jackalope jackalope maftools maftools makecdfenv methylKit milorGWAS mitoClone2 mongolite mongolite mzR NanoMethViz ncdfFlow ndjson ndjson oligo ondisc ondisc pgenlibr podkat qckitfastq qpdf qpdf QuasR R2SWF R2SWF R2SWF raer rbedrock rbedrock RcppCNPy RcppCNPy readspss Rfastp Rgraphviz rhdf5 rhdf5 Rhdf5lib Rhdf5lib Rhtslib rmatio rmatio Rmmquant RNifti RNifti Rsamtools Rsubread rtracklayer scPipe screenCounter seqminer seqminer seqTools ShortRead Signac Signac snpStats sparkwarc sparkwarc strawr strawr TAQMNGR tidypopgen TransView twigstats unigd unigd VariantAnnotation vcfppR vcfppR vcfR vcfR vol2birdR vol2birdR writexl writexl XVector yyjsonr yyjsonr zlib |
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