Showing 7 of total 7 results (show query)
epiforecasts
EpiNow:Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
To identify changes in the reproduction number, rate of spread, and doubling time during the course of outbreaks whilst accounting for potential biases due to delays in case reporting.
Maintained by Sam Abbott. Last updated 5 years ago.
33 stars 4.74 score 111 scripts
hubverse-org
hubEvals:Basic tools for scoring hubverse forecasts
Using functionality from the scoringutils package, this software provides basic tools for scoring hubverse forecasts.
Maintained by Nicholas Reich. Last updated 3 days ago.
4 stars 4.62 score 8 scripts 1 dependents
ai4ci
ggoutbreak:Estimate Incidence, Proportions and Exponential Growth Rates
Simple statistical models and visualisations for calculating the incidence, proportion, exponential growth rate, and reproduction number of infectious disease case time series. This toolkit was largely developed during the COVID-19 pandemic.
Maintained by Robert Challen. Last updated 2 months ago.
1 stars 4.30 scoreepiforecasts
EpiSoon:Forecast Cases Using Reproduction Numbers
To forecast the time-varying reproduction number and use this to forecast reported case counts. Includes tools to evaluate a range of models across samples and time series using proper scoring rules.
Maintained by Sam Abbott. Last updated 2 years ago.
7 stars 4.26 score 25 scripts 1 dependentshubverse-org
hubverse:Easily Install and Load the 'hubverse'
A collection of packages that enables collaborative modeling exercises through a unified framework for aggregating, visualizing, and evaluating forecasts. This package is designed to make it easy to install and load multiple 'hubverse' packages in a single step. Learn more at <https://hubverse.io/en/latest/index.html>.
Maintained by Li Shandross. Last updated 6 months ago.
4.00 score 5 scriptsepiforecasts
qrensemble:Forecast ensembles using Quantile Regression Average (QRA)
Performs quantile regression average
Maintained by Sebastian Funk. Last updated 5 months ago.
3 stars 3.78 score 1 scripts
mrc-ide
threemc:(Matt's) Multi-Level Model of Male Circumcision in Sub-Saharan Africa
Functions and datasets to support, and extend to other Sub-Saharan African countries, Thomas, M. et. al., 2021, A multi-level model for estimating region-age-time-type specific male circumcision coverage from household survey and health system data in South Africa, <arXiv:2108.091422>.
Maintained by Patrick OToole. Last updated 1 years ago.
2.38 score 16 scripts